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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTCTATCGAAGCACTGTCGATGACAAGCATTATGCTATTAAGgtatgctcttattttttatttccatggcaccactcaaaagcttattttgttttcctggtcttctatgaatctgctcattggaaattggatcaccatagtacagattatataaatgtttcttaagttgatcacataatgggattaaaatttctggacctgtggtgattatatttttggatttccag

Basic information

species Arabidopsis thaliana
transcript AT3G45240.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G45240.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA12G07340.1 (Glycine max), 5'ss of exon 5
GTTCTCTATCGAAGCACTGTCGATGACAAGCATTATGCTATTAAGgtatgctcttattttttatttccatggcaccactcaaaagcttattttgttttcctggtcttctatgaatctgctcattggaaattggatcaccatagtacagattatataaatgtttcttaagttgatcacataatgggattaaaatttctggacctgtggtgattatatttttggatttccag
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GCTCTTTATCGAAGCTCTGTTGATGACAAGCATTATGCAATTAAGgttaggaa--actttttggtg----ggca------gacagattactgtaggaaacatggccac-atgggcatggttttttgatacagggcttttatgttctaatagttatcaagaatagtgcatttcgtcatttattgagctgaaaatcttttgaattgaag-----------------------