1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGTCACAGCTCAAGACCTCGTCGACATCATCAAATCACAGCTCCAAAAgtaacaacatagaaaattttacatttccacataaaaagctacaagctttctcatgtgggcggtttagttggatcagtctacatttggtttttagtgttgttcgaagaacctaatatggttttatctgcttctctgtggctgtgttttgcag
species | Arabidopsis thaliana |
transcript | AT3G44890.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CATCAAATCACAGCTCCAAAA GGACATCGACAAACGCCTTGTCTCTCTCCCAGAAATCCGTGAAACCGGAGAEST: gi|125004783|gb|EL077052.1|EL077052
genomic: CATCAAATCACAGCTCCAAAAgtaacaacat ... tgttttgcagGGACATCGACAAACGCCTTGTCTCTCTCCCAGAAATCCGTGAAACCGGAGA
EST: TGTCACAGCTCAAGACCTCGTCGACATCATCAAATCACAGCTCCAAAA GGACATCGACAAACGEST: gi|124775929|gb|EH866056.1|EH866056
genomic: TGTCACAGCTCAAGACCTCGTCGACATCATCAAATCACAGCTCCAAAAgtaacaacat ... tgttttgcagGGACATCGACAAACG
EST: TCTGTCACAGCTCAAGACCTCGTCGACATCATCAAATCACAGCTCCAAAA GGACATCGACAAACGCCTTGTCTCTCTCCCAGAAATCCGTGAAACCGGAGEST: gi|125235428|gb|EL249513.1|EL249513
genomic: TCTGTCACAGCTCAAGACCTCGTCGACATCATCAAATCACAGCTCCAAAAgtaacaacat ... tgttttgcagGGACATCGACAAACGCCTTGTCTCTCTCCCAGAAATCCGTGAAACCGGAG
EST: CTCAAGACCTCGTCGACATCATCAAATCACAGCTCCAAAA GGACATCGACAAACGCCTTGTCTCTCTCCCAGAAATCCGTGAAACCGGAGA
genomic: CTCAAGACCTCGTCGACATCATCAAATCACAGCTCCAAAAgtaacaacat ... tgttttgcagGGACATCGACAAACGCCTTGTCTCTCTCCCAGAAATCCGTGAAACCGGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTCACAGCTCAAGACCTCGTCGACATCATCAAATCACAGCTCCAAAAgtaacaacatagaaaattttacatttccacataaaaagctacaagctttctcatgtgggcggtttagttggatcagtctacatttggtttttagtgttgttcgaagaacctaatatggttttatctgcttctctgtggctgtgttttgcag
- - CAGCTC
- - - AGCTCA
- - - - - - - - - - - - - - - - - - CAGCTC