1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTACCAGAATATATGTTTGCCTTCTACTTTTAATCCGGAGTTTCTCGTCGAACTAGATATGCGTTGCAGCAAGCTTCGGAAGCTATGGGAAGGAACTAAAgtaagtgattttgatgaaaactttcatttttttttttaaatctataatttgattccgtaaatgtttattattgtatcaacatgatcttctttgtcaaatgcag
species | Arabidopsis thaliana |
transcript | AT3G44630.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAAGCTATGGGAAGGAACTAAA CAACTTAGAAATCTCAAGTGGATGGATTTGAGTGATTCTAGAGATTTGAAAEST: gi|116482923|gb|EG525515.1|EG525515
genomic: GAAGCTATGGGAAGGAACTAAAgtaagtgatt ... tcaaatgcagCAACTTAGAAATCTCAAGTGGATGGATTTGAGTGATTCTAGAGATTTGAAA
EST: AACTAGATATGCGTTGCAGCAAGCTTCGGAAGCTATGGGAAGGAACTAAA CAACTTAGAAATCTCAAGTGGATGGATTTGAGTGATTCTAGAGATTTGAAAEST: gi|116448810|gb|EG491402.1|EG491402
genomic: AACTAGATATGCGTTGCAGCAAGCTTCGGAAGCTATGGGAAGGAACTAAAgtaagtgatt ... tcaaatgcagCAACTTAGAAATCTCAAGTGGATGGATTTGAGTGATTCTAGAGATTTGAAA
EST: AACTAGATATGCGTTGCAGCAAGCTTCGGAAGCTATGGGAAGGAACTAAA CAACTTAGAAATCTCAAGTGGATGGATTTGAGTGATTCTAGAGATTTGAAA
genomic: AACTAGATATGCGTTGCAGCAAGCTTCGGAAGCTATGGGAAGGAACTAAAgtaagtgatt ... tcaaatgcagCAACTTAGAAATCTCAAGTGGATGGATTTGAGTGATTCTAGAGATTTGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTACCAGAATATATGTTTGCCTTCTACTTTTAATCCGGAGTTTCTCGTCGAACTAGATATGCGTTGCAGCAAGCTTCGGAAGCTATGGGAAGGAACTAAAgtaagtgattttgatgaaaactttcatttttttttttaaatctataatttgattccgtaaatgtttattattgtatcaacatgatcttctttgtcaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA