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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTCTCAGTGGAACTTAGTCGTTCAGCATCCCAACTTCGACAATCTCACTAAGCTTTTCAGTTTCAACTACAAACCGCTTAATCCTTACTTGAACATAAgtaagtttctcattcagattctttctcttgttcttaagaaatgtttggtttctaataatataatgttttggatcatatattgaag

Basic information

species Arabidopsis thaliana
transcript AT3G29810.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G29810.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G071970_T01 (Zea mays), 5'ss of exon 5
TACTCTCAGTGGAACTTAGTCGTTCAGCATCCCAACTTCGACAATCTCACTAAGCTTTTCAGTTTCAACTACAAACCGCTTAATCCTTACTTGA---ACATAAgtaag------tttctcattcagattctttctcttgttcttaagaaatgtttggtttctaataatataatgttttggatcatatattgaag
    | |||||||||||||| | ||||||||| ||||| || ||| ||||| || | ||||| |||||||||||||| |||| ||| ||   |     ||||||||||      | ||| ||  | |    |     |   |  |   |          |||  | || || | | |  | ||   | |     
---ACACAGTGGAACTTAGTTGCTCAGCATCCAAACTTTGATAATATCACTCAGTTGTTCAGCTTCAACTACAAACCACTTACTCCATATGGGGGTGGCATAAgtaagtaaacttgtcttatagaaaagaatagaaataaaccaacctacctcccaacctctcctgatgtagtttgtctg-tcccgtttcag--

upper sequence: AT3G29810.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM5G826714_T01 (Zea mays), 5'ss of exon 5
TACTCTCAGTGGAACTTAGTCGTTCAGCATCCCAACTTCGACAATCTCACTAAGCTTTTCAGTTTCAACTACAAACCGCTTAATCCTTACT-TG--AACATAAgtaagtttctcattcagattctttctcttgttcttaagaaatgtttggtttctaataatataatgttttggatcatatattgaag
    | |||||||||||||| |  |||||||| ||||| || ||| ||||| || | ||||| |||||||||||||| |||| ||| ||   ||    |||||||||||        ||   |  |      |  |  ||  || |     |  ||  | || |||| | |  | ||  || |     
---ACGCAGTGGAACTTAGTAGCCCAGCATCCAAACTTTGATAATATCACTCAGTTGTTCAGCTTCAACTACAAACCACTTACTCCATATGGTGGTGGCATAAgtaagtaaacttgccatccttatagaaaagaacaaaaataaagcaacctacctcctgatgtaatttatctg-tcccatttcag--

upper sequence: AT3G29810.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G167520_T02 (Zea mays), 5'ss of exon 6
TACTCTCAGTGGAACTTAGTCGTTCAGCATCCCAACTTCGACAATCTCACTAAGCTTTTCAGTTTCAACTACAAACCGCTTAATCCTTACTTGAACATAAgtaagttt------------ctcattcagattctttctcttgttcttaagaaatgtttggtttctaataatataatgttttggatcatatattgaag
||||| ||||||||| | ||||  ||||| |||||||||||||| ||||| |   ||||||| |||||||||| ||| || || || |||      || ||| || |             ||  | | |   ||   ||     |     | |  ||   | | |  |       | ||||    |     |  |  
TACTCGCAGTGGAACCTGGTCGCGCAGCACCCCAACTTCGACAACCTCACCACCATTTTCAGCTTCAACTACAGACCTCTCAACCCCTACGGAGTGATCAgtgagatcgagcaccaccacctggtcctggacctcgttcgcccccactgaagaaattcaatcttttctttctctttttttttccgcgcgcgtgcag-

upper sequence: AT3G29810.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA18G50760.1 (Glycine max), 5'ss of exon 5
TACTCTCAGTGGAACTTAGTCGTTCAGCATCCCAACTTCGACAATCTCACTAAGCTTTTCAGTTTCAACTACAAACCGCTTAATCCTTACTTGAACATAAgtaagttt---ctcattcagattctttctcttgttcttaagaaatgtttggtttctaataatataat----gttttggatcata---tattgaag----------------------------------------------------------------
|| ||| |||||||| | || ||||| ||||| ||||| |||||||| ||| |||| |||||||||||||||||  |  | | ||||||       |||||||||  |   |  |    | |||  | ||| |   | ||    |  ||   | ||   |||||  |     || |  ||||||    ||  ||                                                                 
TATTCTGAGTGGAACATGGTTGTTCAACATCCAAACTTTGACAATCTGACTCAGCTGTTCAGTTTCAACTACAAGTCATTGACTCCTTATGGTTCAATAAgtaagcgtgatcctaacttgtttcgatttctggagttaaaagctttcttaaatactgtgaatattttcttaattcttcatcataaaacatcaaaacttttacttcttattttgataaactatagaaggtaattactgatttttaagttgcttttaacag

upper sequence: AT3G29810.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA13G06660.1 (Glycine max), 5'ss of exon 5
TACTCTCAGTGGAACTTAGTCGTTCAGCATCCCAACTTCGACAATCTCACTAAGCTTTTCAGTTTCAACTACAAACCGCTTAATCCTTACTTGAACATAAgtaagtttc-tcattcagattctttc--tcttgttcttaagaaatgtttggtttctaataatataatgttttggatcatata-ttgaag-----------
|| ||| | |||||||| || ||||| ||||| ||||| |||||||| ||  | ||||||||||||||||||||| |  | | ||| |||  |   |||||||||| |  || ||||    ||| |  ||||      |  ||||  |     |    |||  ||||    |  |   |||| ||  ||           
TATTCTGATTGGAACTTGGTTGTTCAACATCCAAACTTTGACAATCTGACCCAACTTTTCAGTTTCAACTACAAAGCAATAACTCCCTACGGGTCAATAAgtaagtgtaatctttcaaggacttgcaatcttacagacataaaatactgatggttatttaacttaattgaataaagagtatagttttagaccaggcatca

upper sequence: AT3G29810.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G35400.1 (Glycine max), 5'ss of exon 5
TACTCTCAGTGGAACTTAGTCGTTCAGCATCCCAACTTCGACAATCTCACTAAGCTTTTCAGTTTCAACTACAAACCGCTTAATCCTTACTTGAACATAAgtaagtttc-tcattcagattctttc--tcttgttcttaagaaatgtttggtttctaataatataatgttttggatcatata-ttgaag-----------
|| ||| | |||||||| || ||||| ||||| ||||| |||||||| ||  | ||||||||||||||||||||| |  | | ||| |||  |   |||||||||| |  || ||||    ||| |  ||||      |  ||||  |     |    |||  ||||    |  |   |||| ||  ||           
TATTCTGATTGGAACTTGGTTGTTCAACATCCAAACTTTGACAATCTGACCCAACTTTTCAGTTTCAACTACAAAGCAATAACTCCCTACGGGTCAATAAgtaagtgtgatctttcaaggacttgcaatcttacagacataaaatactgatggttatttaacttaattgaataaagtgtatagttttagaccaggcatca

upper sequence: AT3G29810.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA19G04210.1 (Glycine max), 5'ss of exon 6
TACTCTCAGTGGAACTTAGTCGTTCAGCATCCCAACTTCGACAATCTCACTAAGCTTTTCAGTTTCAACTACAAACCGCTTAATCCTTACTTGAACATAAgtaagtttc-tcattcagattctttc--tcttgttcttaagaaatgtt--tggtt-tctaa--taatataatgttttggatcata--tattgaag-----
|| ||| | ||||| || || ||||| ||||| || ||||||||||| ||  | ||||||||||||||||||||| |  ||| ||| |||      |||||||||| |   | ||||    ||| |  | ||     ||  ||||| |  ||||| | |||  || |  ||| |  ||  | | |   | |  |      
TATTCTAATTGGAATTTGGTTGTTCAACATCCAAATTTCGACAATCTGACCCAACTTTTCAGTTTCAACTACAAATCAATTACTCCCTACGGATCAATAAgtaagtgtggcctttcaaggacttgcaatgttagagatataaaatgctgatggttatttaacttagttgaatatagtgtgtgacaaccactccaagatta

upper sequence: AT3G29810.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G27560.1 (Glycine max), 5'ss of exon 5
TACTCTCAGTGGAACTTAGTCGTTCAGCATCCCAACTTCGACAATCTCACTAAGCTTTTCAGTTTCAACTACAAACCGCTTAATCCTTACTTGAACATAAgtaagtt---tctcattcagattctttctcttgttcttaagaaatgtttggtttctaataatataatgttttggatcatatattgaag------------------------------------------------------------
|| ||| | |||||| | || ||||| ||||| ||||| |||||||| ||| | || |||||||||||||||||  |  | | ||||||       ||||||||||    |||||    | |||  | ||| |   | || |  |  ||   | ||   || ||  | | ||   || |  ||  ||                                                             
TATTCTGAATGGAACATGGTTGTTCAACATCCAAACTTTGACAATCTGACTCAACTGTTCAGTTTCAACTACAAGTCATTGACTCCTTATGGTTCAATAAgtaagtgcgatctcaacttgtttcagtttctggagttaaaaattttcttaaatactgtgaaaatgttatcttaattctt-cataaaacattttactcttattttcataaacgagaaggtaattactgatcttaagttgcttttaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86082822|gb|DR378581.1|DR378581
EST:     TCAGCTTTTCAGTTTCAACTACAAACCGCTTAATCCTTACTTGAACATAA                         ATGACACGGCCATGCTATGGGGAATCAAGTTCTACAATGATTTTTTAAGCC
genomic: TAAGCTTTTCAGTTTCAACTACAAACCGCTTAATCCTTACTTGAACATAAgtaagtttct ... tatattgaagATGACACGGCCATGCTATGGGGAATCAAGTTCTACAATGATTTTTTAAGCC