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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTCGACTAACCCCCGTGGTGCTGAGAGGCTACCACCAGATATAGTCACGCCTGAATCAGATTTTTACCTCCGTCGACTGTGGGGCGACCCTAATGAGgttcataaatttgaatctacttgcttttatttgagaatggcttcaagatcatggcacattttgttggtatggcatgcag

Basic information

species Arabidopsis thaliana
transcript AT3G27470.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164188706|gb|ES015659.1|ES015659
EST:     GAATCAGATTTTTACCTCCGTCGACTGTGGGGCGACCCTAATGAG                         GATTTAACAGTCAAACAGCGGTATCTTGTAACATTTACGGTTGGCTATGAT
genomic: GAATCAGATTTTTACCTCCGTCGACTGTGGGGCGACCCTAATGAGgttcataaat ... tggcatgcagGATTTAACAGTCAAGCAGCGGTATCTAGTAACATTTACGGTTGGCTATGAT
EST: gi|125188939|gb|EL203893.1|EL203893
EST:     CGCCTGAATCAGATTTTTACCTCCGTCGACTGTGGGGCGACCCTAATGAG                         GATTTAACAGTCAAGCAGCGGTATCTAGTAACATTTACGGTTGGC
genomic: CGCCTGAATCAGATTTTTACCTCCGTCGACTGTGGGGCGACCCTAATGAGgttcataaat ... tggcatgcagGATTTAACAGTCAAGCAGCGGTATCTAGTAACATTTACGGTTGGC