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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCTTCTAGCAGCTCTTGGATCCATTCAATTTGTATCCAACATAGCATTTGCTTATGTTGTATTGAACAAAATGGTTACTGTCAAgtatgcaaactacctcgctgcaatctttaacatgcattaccgatttactaagtctctgctcttctaatatctttagtatgccttggtcacag

Basic information

species Arabidopsis thaliana
transcript AT3G26670.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G26670.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os02g31874.1 (Oryza sativa), 5'ss of exon 5
TCCCTTCTAGCAGCTCTTGGATCCATTCAATTTGTATCCAACATAGCATTTGCTTATGTTGTATTGAACAAAATGGTTACTGTCAAgtatgcaaactac--ctcgctgcaatctttaacatgcattaccgatttactaagtctctgctcttcta---atatctttagtatgccttggtcacag-------
|| ||||| |||||||||||||| ||||||||||| ||||| || |||||||||||  |||| |||||||| |   || | || |||||||||   | |  ||   || ||| |||          |  || || | || |  |    |||  |   |||  ||||  | |  ||               
TCACTTCTTGCAGCTCTTGGATCGATTCAATTTGTGTCCAATATTGCATTTGCTTACTTTGTGTTGAACAAGACCATTTCAGTGAAgtatgcattgttctactttttggaatttttttataaaggaaatgagttccaaacttccaatacttggaattatagatttatgaagtttttactctgcttttcag

upper sequence: AT3G26670.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G477146_T01 (Zea mays), 5'ss of exon 5
TCCCTTCTAGCAGCTCTTGGATCCATTCAATTTGTATCCAACATAGCATTTGCTTATGTTGTATTGAACAAAATGGTTACTGTCAAgtatgcaaactac---ctcgctgcaatctttaacatgcattaccgatttactaagtctctgctcttctaatatctttagtatgccttggtcacag
|| || || |||||||||||||| ||||| ||||| |||||||| || ||||| ||  |||| |||||||| |   || | || ||||||| |   | |   ||  ||   | ||  || |   || |    |  |   | ||       |  | |    |||  |   | ||   ||   
TCACTGCTTGCAGCTCTTGGATCAATTCAGTTTGTTTCCAACATTGCTTTTGCCTACTTTGTGTTGAACAAGACTATTTCAGTGAAgtatgtatgtttctgactttctcgtagctggaataaaaatcagaattacatggaatcatgtgattaatgaagattttgctcctcttt--ccag--

upper sequence: AT3G26670.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G07510.1 (Glycine max), 5'ss of exon 5
TCCCTTCTAGCAGCTCTTGGATCCATTCAATTTGTATCCAACATAGCATTTGCTTATGTTGTATTGAACAAAATGGTTACTGTCAAgtatgcaaactacctcgctgcaatctttaacatgcattaccgatttactaagtctctgctcttctaatatctttagtatgccttggtcacag-----------
|| ||||| ||||| || |||||  |||| |||||||| ||||| || || |||||  |||| |||||||||||||| || ||||||||||| || |      |||  ||            ||      ||   |   ||||| |||     ||  | | ||| || |   | |  |           
TCACTTCTTGCAGCGCTGGGATCTGTTCAGTTTGTATCTAACATTGCCTTCGCTTACTTTGTCTTGAACAAAATGGTGACAGTCAAgtatgctaaat-ttgaactgagattaccgtttcatttttgtttgttttcacaactctgttctagctgtaattcttgta-gcttaattgatggcatttgatcag

upper sequence: AT3G26670.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA16G26550.1 (Glycine max), 5'ss of exon 6
TCCCTTCTAGCAGCTCTTGGATCCATTCAATTTGTATCCAACATAGCATTTGCTTATGTTGTATTGAACAAAATGGTTACTGTCAAgtatgcaaactacctcgctgcaat--ctttaacatgcattaccgattt-actaagtctctgct--cttctaatatctttagtatgcct--tggtcacag-----
|| ||||| ||||| || |||||  |||| |||||||| ||||| || || |||||  |||| |||||||||||||| || || |||||||| || |      |||| ||  || |  |||   |    | ||| ||||| ||| | ||  ||  |||||  | |||  |   |  |||||         
TCACTTCTTGCAGCACTAGGATCTGTTCAGTTTGTATCTAACATTGCCTTCGCTTACTTTGTCTTGAACAAAATGGTGACAGTAAAgtatgctaaat-ttgaactgcgattactgtttcatatttgtttgttttcactaactctgttctagctgttaatacttgtagcttaattgatggtcttttatcag

upper sequence: AT3G26670.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 5'ss of exon 5
TCCCTTCTAGCAGCTCTTGGATCCATTCAATTTGTATCCAACATAGCATTTGCTTATGTTGTATTGAACAAAATGGTTACTGTCAAgtatg--caaact---acctcgctgcaatctttaacat--gcattaccgatttactaagtctc---tgctcttctaat---atctttagtatgccttggtcacag
|| ||||| ||||| || ||||| |||||||| || |||||||| |||||||| ||  | || ||||||||||||||  ||||||||||||  ||||     |    |||  | |    ||| |   || |    || |  | | |  |   |   || ||||    || |  | |||  |||  |  |||
TCACTTCTTGCAGCCCTGGGATCAATTCAATTCGTTTCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAAgtatgttcaaatctgaagtgagcttgatttccgaactttgacactgttaatattttgatttccatgtatactgctaagtaaatttgaaatattgcttcttttcag