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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGCTGAAGTACGCATAGCAGCTGCCGGAAAAGTTACAAAGTTTTGTCGGATTCTAAACCCTGAAATTGCTATCCAGCACATTCTCCCCTGTGTGAAGgtacatgcttaagagaattcaattgttttccaagttccttacagaaaatcaacgtatagttgttgcatattactgatgattcctcttaatgctacctgtag

Basic information

species Arabidopsis thaliana
transcript AT3G25800.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G25800.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA20G24790.1 (Glycine max), 5'ss of exon 6
TGAAGCTGAAGTACGCATAGCAGCTGCCGGAAAAGTTACAAAGTTTTGTCGGATTCTAAACCCTGAAATTGCTATCCAGCACATTCTCCCCTGTGTGAAGgtacatgcttaagagaattcaattgttttccaagttccttacagaaaatcaacgtatagttgttgcatattactgatgattcctcttaat--gctacctgtag-------------------------------------
||| ||||||||||||||||||||||| |||||||| || |||||||| |||||| |||| || ||  |||| || ||||| ||||| || |||||||||||| |    |  |  ||   |||| |    ||      |||| ||  ||  |   | ||   || | |  |  || |   ||   | | |  | ||  | ||                                      
TGAGGCTGAAGTACGCATAGCAGCTGCTGGAAAAGTGACCAAGTTTTGCCGGATTTTAAATCCAGATCTTGCAATTCAGCATATTCTTCCTTGTGTGAAGgtatacatctttggaaaagaaattataacacattaatattactgattat--atacagaggctttccttggttttggtttgtcaattcagtaggataaatttatatttacaggtttaagttctttgaaacaacttttgcag

upper sequence: AT3G25800.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA10G42250.1 (Glycine max), 5'ss of exon 6
TGAAGCTGAAGTACGCATAGCAGCTGCCGGAAAAGTTACAAAGTTTTGTCGGATTCTAAACCCTGAAATTGCTATCCAGCACATTCTCCCCTGTGTGAAGgtacatgcttaagagaattcaattgttttccaagttccttacagaaaatcaacgtatagttgttgcatattactgatgattcctctta--atgctacctgtag-------------------------------------
||| |||||||| |||||||||||||| |||||||| || |||||||| |||||| |||| || ||  || | || ||||| |||||  | |||||||||||| |    |  |  ||   |||| |    ||      |||| ||  ||  |   | ||   || | |  |  || |   ||   | |  ||||||  | ||                                      
TGAGGCTGAAGTGCGCATAGCAGCTGCTGGAAAAGTGACCAAGTTTTGCCGGATTTTAAATCCAGATCTTTCAATTCAGCATATTCTTTCTTGTGTGAAGgtatacatctttggaaaagaaattataacacattagtattactgattat--atacagaggcttttcttggttttggttggtcaattcagtatgctaaatttatatttacaggtttaagttctttgaaacaacttttgcag

upper sequence: AT3G25800.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G10790.2 (Glycine max), 5'ss of exon 6
TGAAGCTGAAGTACGCATAGCAGCTGCCGGAAAAGTTACAAAGTTTTGTCGGATTCTAAACCCTGAAATTGCTATCCAGCACATTCTCCCCTGTGTGAAGgtacatgcttaagagaattcaattgttttccaagttccttacagaaaatca-acgtatagttgttgcatattactgatgattcctcttaatgctacctgtag
||||||||||||||| || |||||||| || ||||| || |||||||| |||||  |||| || ||  || | || ||||| ||||| || || ||||||||   |  ||       ||   ||| | |  || |||  ||     ||| | |  || ||   |   ||| |    | |||   |                 
TGAAGCTGAAGTACGGATTGCAGCTGCTGGGAAAGTGACCAAGTTTTGCCGGATATTAAATCCAGATCTTTCAATTCAGCATATTCTTCCTTGCGTGAAGgtgtctctttgg-----tt---ttggtcttgaaattcagtattctgaattatatttacaggc-taaaatactttgcaagatctttgcag-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86040358|gb|DR336113.1|DR336113
EST:     GATTCTAAACCCTGAAAATTGCTATCCAGCACATTCTCCCCTGTGTGAAG                         GAGCTATCATCAGACTCTTCTCAGCATGTCAGATC
genomic: GATTCTAAACCCTGAAA-TTGCTATCCAGCACATTCTCCCCTGTGTGAAGgtacatgctt ... ctacctgtagGAGCTATCATCAGACTCTTCTCAGCATGTCAGATC
EST: gi|86040356|gb|DR336111.1|DR336111
EST:     GGATTCTAAACCCTGAAATTGCTATCCAGCACATTCTCCCCTGTGTGAAG                         GAGCTATCATCAGACTCTTCTCAGCATGTCAGATCTGCATTGGCCTCAGTT
genomic: GGATTCTAAACCCTGAAATTGCTATCCAGCACATTCTCCCCTGTGTGAAGgtacatgctt ... ctacctgtagGAGCTATCATCAGACTCTTCTCAGCATGTCAGATCTGCATTGGCCTCAGTT