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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTGCACCTTCTTTGATCTCTTCAGGAACTGGTAATTCTTCAGCAGCTAGGAACAATATGATTGGGGAAATCGAGAACCGATCAACATTCCTCTTAGCAgtaagttcacactttcaatataatgttaaatgcaattggatttgaaacaaagaatcaattgtttaaacttgattacag

Basic information

species Arabidopsis thaliana
transcript AT3G25690.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G25690.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os11g01439.2 (Oryza sativa), 5'ss of exon 3
---AGGTGCACCTTCTTTGATCTCTTCAGGAACTGGTAATTCTTCAGCAGCTAGGAACAATATGATTGGGGAAATCGAGAACCGATCAACATTCCTCTTAGCAgtaagttc---------acactttcaatataatgt-taaatgcaattggatttgaaacaaagaatcaattgtttaaacttgattacag-----------------------------------------
    |   || ||||| ||   ||  ||  | |  ||   | |   |  |  || | ||| |||||||| || || |||||  ||||||||||||||||||| |||||||          |  ||| |  |   |  | || || | |  | |||      |    || | |  || |   | |||||                                            
GAAGGACACAACTTCTCTGGGATCAACAACATCAAGTGCCTTT---GATGTGAGAAGCAACATGATTGGAGAGATTGAGAATAGATCAACATTCCTCTTAGCTgtaagttattcaagatgatgcttcctttcagaaatatatatactaccgaattccct-tagtccattagtaattcagg-tagattattatgaggactgactttttatataaaaaaatggatttgtttcag

upper sequence: AT3G25690.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os12g01449.1 (Oryza sativa), 5'ss of exon 4
---AGGTGCACCTTCTTTGATCTCTTCAGGAACTGGTAATTCTTCAGCAGCTAGGAACAATATGATTGGGGAAATCGAGAACCGATCAACATTCCTCTTAGCAgtaagttcacactttcaatataatgttaaatg-caattggatttgaaacaaagaatcaattgtttaaacttgattacag---------------------------------------------------
    |   || ||||| ||   ||  ||  | |  ||   |||   |  |  || | ||| |||||||| || || |||||  ||||||||||||||||||| |||||||      ||||| || ||| ||  |  ||     || |   ||  |    |  | ||  |    | |||   |                                                   
GAAGGACACAACTTCTCTGGGATCAACAACATCAAGTGTCTCT---GATGTGAGAAGCAACATGATTGGAGAGATTGAGAATAGATCAACATTCCTCTTAGCTgtaagtta-----ttcaagatgatgctacctttcagaaatatatactactgaattcctttagtccactgctaattcaggtagattattatgaggacttactttttatataaaaaaatggatttgtttcag

upper sequence: AT3G25690.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G396927_T01 (Zea mays), 5'ss of exon 1
AGGTGCACCTTCTTTGATCTCTTCAGGAACTGGTAATTCTTCAGCAGCTAGGAACAATATGATTGGGGAAATCGAGAACCGATCAACATTCCTCTTAGCAgtaagttcacactttcaatataatgttaaatgcaattggatttgaaacaaagaat-caattgtttaaacttgattacag---------------------------------------------------------------
                             |    |||  ||  |  || || |  || |||||||| || ||||||||| ||||||||||||||||||| ||||||      |  |   |  |  |   |    | |       ||   | || | | | | || | || | |||| |                                                                
-------------------------ATGTCATCCAATGTTTATGATGCCAGAAGTAACATGATTGGAGAGATCGAGAACAGATCAACATTCCTCTTAGCTgtaagtattttttgccggcaccacctggcacaagaatcctgccaaatttatgagttccactattaatacataattataactagtaaccaaattttaataatgcaaagtgacaaatgttttataaaaacatggaatgctccag

upper sequence: AT3G25690.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G062738_T01 (Zea mays), 5'ss of exon 4
---AGGTGCACCTTCTTTGATCTCTTCAGGAACTGGTAATTCTTCAGCAGCTAGGAACAATATGATTGGGGAAATCGAGAACCGATCAACATTCCTCTTAGCAgtaagttcacactttcaatataatgttaaatgcaattggatttgaaacaaagaat-caattgtttaaacttgattacag---------------------------------------------------------------
   | | |   | |||||    ||   |  | |   |   |||   |  || || |  ||||||||||| || || |||||| ||||||||||||||||||| ||||||     ||      |  || || ||   || |    |  ||   | || | | | | || |  | | |||| |                                                                
AAAAAGGGAGACATCTTTAGGGTCAATATCATCCAATGTATCT---GATGCCAGAAGTAATATGATTGGAGAGATTGAGAACAGATCAACATTCCTCTTAGCTgtaagtattttctgctggcaccatcttgaacaaaaatcctgtgaaatttatgagttccactattaatgcataattaaaactagtaatcagatttcaataatgaaaagtgacaaatgttttataaaaacatggaatgtttcag

upper sequence: AT3G25690.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA20G32630.1 (Glycine max), 5'ss of exon 3
--AGGTGCAC-CTTCTTTGATCTCTTCAGGAACTGGTAATTCTTCAGCAGCTAGGAACAATATGATTGGGGAAATCGAGAACCGATCAACATTCCTCTTAGCAgtaagttcacactttcaatataatgttaaatgcaattggatttgaaacaaagaatca---attgtttaaacttgattacag------
  ||  | |  |||| || || || |||  ||||    || | |  |  ||||||| ||| ||||||||||| || |||||  ||||| ||||||||||||| |||  || | | || |       | |   ||    |   ||| | |    |  || |   ||| | ||| |||  | |  |      
AAAGAAGGATACTTCATTAATATCATCAACAACTT---ATCCATTTGATGCTAGGAGCAACATGATTGGGGAGATTGAGAATAGATCATCATTCCTCTTAGCTgtacattaaaatttccctccagttttgttattttttcacattggcattctatcattacaaattttataacctttttaatggatctag

upper sequence: AT3G25690.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA01G22620.1 (Glycine max), 5'ss of exon 4
AGGTGCACCTTCTTTGATCTCTTCAGGAACTGGTAATTCTTCAGCAGCTAGGAACAATATGATTGGGGAAATCGAGAACCGATCAACATTCCTCTTAGCAgtaagttcacactttcaa-tataatgttaaatgcaattggatttgaaacaaagaatcaat---tgtttaaacttgattacag-----------------
 | | |  | ||  |  |   | |     |  ||||| | || |  ||||||| ||| |||||||| ||||| |||||  ||||| ||||||||||||| ||| ||| |  ||| ||  |||  |||||  |    |    |||  |   |||  | ||    | ||| ||    ||| |                   
GGATACTTCATCACTATTAGTTACTTCTGCAAGTAATGCATCTGATGCTAGGAGCAACATGATTGGTGAAATTGAGAATAGATCATCATTCCTCTTAGCTgtatgttgaagcttccatctattttgttatttttc-tcatttttacactgaagtcttaacacatttttgaaaaatatttctcttctgtgtaacaatcag