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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATTTCTGCCCTGCACTTACTAAGGCTGTGAAAACTATGAAAAAGGGTGAAAAGGTCCTTCTGACAGTTAAACCACAATgtaagacgatttgtctcaattgttttttcactgatcctggtatggtgtgtatatcatctcttattccaatgtgcttctgaatgagacag

Basic information

species Arabidopsis thaliana
transcript AT3G25230.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G25230.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA18G32830.1 (Glycine max), 5'ss of exon 5
GTCATTTCTGCCCTGCACTTACTAAGGCTGTGAAAACTATGAAAAAGGGTGAAAAGGTCCTTCTGACAGTTAAACCACAATgtaag-------------acgatttgtctcaattgtt--ttttcactga---tcctggtatggtgtgtatatcatctcttattccaat--gtgcttctgaatgagacag--------
 |||||  || |||||| |  | |||||||| ||||| ||||| ||||| || || || ||| |||||||||| ||||||||||||             ||    ||| |   |  ||   | | ||| |   || || |||  | | | |    ||||| |||  |||   || |  |   |  | | |        
-TCATTATTGTCCTGCATTGTCAAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTTAAGCCACAATGtaagttctctaagcgccacataatgttttggtgattagctattactaacactcatgatattttctttctcgtttctctaatttgaatctatgttcatttctttgtcgggtcataga

upper sequence: AT3G25230.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA03G21690.1 (Glycine max), 5'ss of exon 5
GTCATTTCTGCCCTGCACTTACTAAGGCTGTGAAAACTATGAAAAAGGGTGAAAAGGTCCTTCTGACAGTTAAACCACAATgtaag------ac-gatttg-tctcaattgttttttcactgatcctggtatggtgtgtatatcatctcttattccaatgtgcttctgaatgagacag----------------------------
|| |||| || |||||  |  | |||||||| ||||| ||||| ||||| || || || ||||||||||| || ||||||||||||      || |||||| |  | ||    | |    |  |  |   |     || |||| |    | ||   ||| |  |  | | | | | |                             
GTTATTTTTGTCCTGCTTTGTCAAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGCTTCTGACAGTGAAGCCACAATgtaagtattgtacagatttggtacccatcacctatgttttttttttaaaa-aacatgcatatgactagtaatcttaatattatgttcatttacaaatttttatgtgttcttttgtttgtttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164207439|gb|ES085740.1|ES085740
EST:     AAAAGGGTGAAAAGGTCCTTCTGACAGTTAAACCACAAT                         ATGGTTTTGGGGAGAAGGGCAAGCCAGCCTCTGCTGGTGAAGGACGACGGT
genomic: AAAAGGGTGAAAAGGTCCTTCTGACAGTTAAACCACAATgtaagacgat ... aatgagacagATGGTTTTGGGGAGAAGGGCAAGCCAGCCTCTGCTGGTGAAGG-CG-CGGT
EST: gi|116475203|gb|EG517795.1|EG517795
EST:     GAAAACTATGAAAAAGGGTGAAAAGGTCCTTCTGACAGTTAAACCACAAT                         ATGGTTTTGGGGAGAAGGGCAAGCCAGCCTCTGCTGGTGAAGGCGCGGTTC
genomic: GAAAACTATGAAAAAGGGTGAAAAGGTCCTTCTGACAGTTAAACCACAATgtaagacgat ... aatgagacagATGGTTTTGGGGAGAAGGGCAAGCCAGCCTCTGCTGGTGAAGGCGCGGTTC
EST: gi|116434999|gb|EG477591.1|EG477591
EST:     GAAAACTATGAAAAAGGGTGAAAAGGTCCTTCTGACAGTTAAACCACAAT                         ATGGTTTTGGGGAGAAGGGCAAGCCAGCCTCTGCTGGTGAAGGCGCGGTTC
genomic: GAAAACTATGAAAAAGGGTGAAAAGGTCCTTCTGACAGTTAAACCACAATgtaagacgat ... aatgagacagATGGTTTTGGGGAGAAGGGCAAGCCAGCCTCTGCTGGTGAAGGCGCGGTTC
EST: gi|116475202|gb|EG517794.1|EG517794
EST:     GAAAACTATGAAAAAGGGTGAAAAGGTCCTTCTGACAGTTAAACCACAAT                         ATGGTTTTGGGGGAGAAGGGCAAGCCAGCCTCTGCTGGTGAAGGCGCGGTT
genomic: GAAAACTATGAAAAAGGGTGAAAAGGTCCTTCTGACAGTTAAACCACAATgtaagacgat ... aatgagacagATGGTTTTGGGG-AGAAGGGCAAGCCAGCCTCTGCTGGTGAAGGCGCGGTT
EST: gi|116435001|gb|EG477593.1|EG477593
EST:     GAAAACTATGAAAAAGGGTGAAAAGGTCCTTCTGACAGTTAAACCACAAT                         ATGGTTTTGGGGAGAAGGGCAAGCCAGCCTCTGCTGGTGAAGGCGCGGTTC
genomic: GAAAACTATGAAAAAGGGTGAAAAGGTCCTTCTGACAGTTAAACCACAATgtaagacgat ... aatgagacagATGGTTTTGGGGAGAAGGGCAAGCCAGCCTCTGCTGGTGAAGGCGCGGTTC
EST: gi|47828402|gb|CK118086.1|CK118086
EST:     GAAAACTATGAAAAAGGGTGAAAAGGTCCTTCTGACAGTTAAACCACAAT                         ATGGTTTTGGGGAGAAGG-CTAAGACAGCCTCTGCTGGTGAAGGCGCGGTT
genomic: GAAAACTATGAAAAAGGGTGAAAAGGTCCTTCTGACAGTTAAACCACAATgtaagacgat ... aatgagacagATGGTTTTGGGGAGAAGGGC-AAGCCAGCCTCTGCTGGTGAAGGCGCGGTT
EST: gi|164208663|gb|ES093802.1|ES093802
EST:     AAAAAGGGTGAAAAGG-CCTTCTGACAGTTAAACCACAAT                         ATGGTTTTGGGGAGAAGGGCAAGCCAGCCTCTGCTGGTGAAGGCGCGGTTC
genomic: AAAAAGGGTGAAAAGGTCCTTCTGACAGTTAAACCACAATgtaagacgat ... aatgagacagATGGTTTTGGGGAGAAGGGCAAGCCAGCCTCTGCTGGTGAAGGCGCGGTTC