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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAGCTGGTATGGGTGCTAGAGTTGGTATCTTTGATGCTGATGTCTATGGTCCAAGTCTACCAACCATGGTCAATCCTGAGAGCCGTATATTGGAAATGgtaatattctctgactcaccttgtgatagcagtaacacacaaaggactaatgtttttcgagttctgtatatgttcaatag

Basic information

species Arabidopsis thaliana
transcript AT3G24430.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G24430.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os01g52170.1 (Oryza sativa), 5'ss of exon 6
ATTAGCTGGTATGGGTGCTAGAGTTGGTATCTTTGATGCTGATGTCTATGGTCCAAGTCTACCAACCATGGTCAATCCTGAGAGCCGTATATTGGAAATGgtaatattctctgactcaccttgtgatagcagtaacacacaaaggactaatgtttttcgagttctgtatatgttcaatag
||||||||||||||| || || ||||| || ||||||||||||||||  ||||| ||  ||||||| |||||   |||||| | |||  |  | |  |||||||   |   ||| | |   ||| |    |  |  |      | ||||||  |  |  |      | ||  || |    
ATTAGCTGGTATGGGGGCCAGGGTTGGAATATTTGATGCTGATGTCTTCGGTCCGAGCTTACCAACTATGGTTTCTCCTGAAAACCGGCTGCTAGTGATGgtaa-gctgattgaataattgtgttaacaaaaaattagtggttgcactaataatggtaaa--cagatttacctttag---

upper sequence: AT3G24430.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA09G31980.1 (Glycine max), 5'ss of exon 6
ATTAGCTGGTATGGGTGCTAGAGTTGGTATCTTTGATGCTGATGTCTATGGTCCAAGTCTACCAACCATGGTCAATCCTGAGAGCCGTATATTGGAAATGgtaatattctctgactcaccttgtgatagcagt-aacacacaaaggactaatgtttttcgagttctgtatatgttcaatag
 || |||| ||||||||||||||||||||| |||||||||||||| |||||||||||  ||||||| ||||||  |||||| | |||  | || | |||||||  ||    | |  ||  || |  ||  | | |    |   || |||       |    |||| |  | | | |   ||
TTTGGCTGATATGGGTGCTAGAGTTGGTATATTTGATGCTGATGTTTATGGTCCAAGCTTACCAACTATGGTCTCTCCTGAAAACCGACTGTTAGTAATGgtatgatctgataaaccatttttttttaatatttagttgattgagtactgtaaacataattgttcagagtct-tgctgcag

upper sequence: AT3G24430.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA07G09820.1 (Glycine max), 5'ss of exon 6
ATTAGCTGGTATGGGTGCTAGAGTTGGTATCTTTGATGCTGATGTCTATGGTCCAAGTCTACCAACCATGGTCAATCCTGAGAGCCGTATATTGGAAATGgtaatattctctga-ctcaccttgtgatagcagtaac-acacaaaggactaatgtttttcgagttctgtatatgttcaatag--
 || |||| ||||||||||||||||||| | |||||||||||||| |||||||||||  |||| || ||||||  |||||| | |||  | || | |||||||  ||    | | |  |  || |  |   | ||   |    |  || || ||       | || |  | ||  |   |    
TTTGGCTGATATGGGTGCTAGAGTTGGTCTATTTGATGCTGATGTTTATGGTCCAAGCTTACCGACTATGGTCTCTCCTGAAAACCGACTGTTAGTAATGgtatgatctgataaaccaattttttctttttaatatttagttgattgagtactgcaaacataattgttcagattcttgctgcag

upper sequence: AT3G24430.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv11s0016g04250.t01 (Vitis vinifera), 5'ss of exon 5
ATTAGCTGGTATGGGTGCTAGAGTTGGTATCTTTGATGCTGATGTCTATGGTCCAAGTCTACCAACCATGGTCAATCCTGAGAGCCGTATATTGGAAATGgtaatattctctgactcaccttgtgatagcagtaacacacaaagg-actaatgtttttcgagttctgtatatgttcaatag
  | || |||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||   ||||| |   |  |  | ||||||||| |||||   |       || ||||     |  ||   |  |    |  |||  ||  |    || | || |||  |||
TCTGGCCGGTATGGGCGCTAGAGTTGGAATCTTTGATGCTGATGTCTATGGTCCAAGTTTACCAACAATGGTCTCCCCTGAAAATAGGCTGCTAGAAATGgtagtattccaag------tttttgattagctttccatgtattgatggtgctgtgcttacaaccatgaaaatcttctttag