Sequence
atgc intronic sequence ATGC exonic sequenceAGGACGGTCCTCGCAATGCCAGAAAATGGAATCGGCTTGTTTCCAGATGTTGGATTTTCATATATTGCAGCTCATAGCCCTGGCGAAGGATCTGTTGgtatgtttcatatagctgagaccctcaacaatttgcataacaatttgctgtagtatcattatccaccagcaacttttcaaccttcaaattctgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G24360.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G24360.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: EFJ26244 (Selaginella moellendorffii), 5'ss of exon 5
AGGACGGTCCTCGCAATGCCAGAAAATGGAATCGGCTTGTTTCCAGATGTTGGATTTTCATATATTGCAGCTCATAGCCCTGGCGAAGGATCTGTTGgtatgtttcatatagctgagaccctcaacaatttgcataacaatttgctgtagtatcattatccaccagcaacttttcaaccttcaaattctgcag
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AGGACGGTTCTTGCCATGCCTGAGAATGGAATCGGCTTGTTTCCAGACGTTGGTTTTGCATATATAGCAGCTCGAACTCCTGCAAATGGAGCTGTAGgtgagtttcgtagaa--agattgtttgtccttttgttttccttgtggatgtgaaatagct-tgagattgtag------------------------
upper sequence: AT3G24360.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: EFJ14541 (Selaginella moellendorffii), 5'ss of exon 5
AGGACGGTCCTCGCAATGCCAGAAAATGGAATCGGCTTGTTTCCAGATGTTGGATTTTCATATATTGCAGCTCATAGCCCTGGCGAAGGATCTGTTGgtatgtttcatatagctgagaccctcaacaatttgcataacaatttgctgtagtatcattatccaccagcaacttttcaaccttcaaattctgcag
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AGGACGGTTCTTGCCATGCCTGAGAATGGAATCGGCTTGTTTCCAGACGTTGGTTTTGCATATATAGCAGCTCGAACTCCTGCAAATGGAGCTGTAGgtgagtttcgtagaa--agattgtttgtctttttgttttccttgtggatgtgaaatagct-tgagattgcag------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86073000|gb|DR368757.1|DR368757EST: TGTTGGATTTTCATATATTGCAGCTCATAGCCCTGGCGAAGGATCTGTTG GTGCTTACCTAGGTATGACTGGGAGAAGGATTTCCACACCTTCAGATGCAC
genomic: TGTTGGATTTTCATATATTGCAGCTCATAGCCCTGGCGAAGGATCTGTTGgtatgtttca ... aattctgcagGTGCTTACCTAGGTATGACTGGGAGAAGGATTTCCACACCTTCAGATGCAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGACGGTCCTCGCAATGCCAGAAAATGGAATCGGCTTGTTTCCAGATGTTGGATTTTCATATATTGCAGCTCATAGCCCTGGCGAAGGATCTGTTGgtatgtttcatatagctgagaccctcaacaatttgcataacaatttgctgtagtatcattatccaccagcaacttttcaaccttcaaattctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA