1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGAGAAATCAAGGATTACACTATCCATCAAACAACTAGAAGATGATCCTCTTCTAGAAACATTAGACAAAGTGATTTTGAAGgtaaaacaatgtgaatgaatgtgttttctgtctcttgtgggtcttagtgatttttaatagataattgaatattgttacag
species | Arabidopsis thaliana |
transcript | AT3G23700.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AACATTAGACAAAGTGATTTTGAAG GACAGTTCTACTGGATCTCCEST: gi|116466810|gb|EG509402.1|EG509402
genomic: AACATTAGACAAAGTGATTTTGAAGgtaaaacaat ... attgttacagGACAGTTCTACTGGATCTCC
EST: AACTAGAAGATGATCCTCTTCTAGAAACATTAGACAAAGTGATTTTGAAG GACAGTTCTACTGGATCTCCTTCGCTAAGCTCGAACAATGGGGATACAATTEST: gi|125048674|gb|EL120943.1|EL120943
genomic: AACTAGAAGATGATCCTCTTCTAGAAACATTAGACAAAGTGATTTTGAAGgtaaaacaat ... attgttacagGACAGTTCTACTGGATCTCCTTCGCTAAGCTCGAACAATGGGGATACAATT
EST: AAGATGATCCTCTTCTAAGAAACATTAGACAAAGTGATTTTGAAG GACAGTTCTACTGGATCTCCTTCGCTAAGCTCGAACAATGGGGATACAATT
genomic: AAGATGATCCTCTTCT-AGAAACATTAGACAAAGTGATTTTGAAGgtaaaacaat ... attgttacagGACAGTTCTACTGGATCTCCTTCGCTAAGCTCGAACAATGGGGATACAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGAAATCAAGGATTACACTATCCATCAAACAACTAGAAGATGATCCTCTTCTAGAAACATTAGACAAAGTGATTTTGAAGgtaaaacaatgtgaatgaatgtgttttctgtctcttgtgggtcttagtgatttttaatagataattgaatattgttacag
- - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG