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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGAGGAAAGACACACTTACTGAAGATGAGGCAAGATTTTATGTTGGGGAAACTGTCTTAGCTATCGAGTCCATTCATAAGCACAATTATATCCACAGgtctagtgaagcaatcaactatctgagtaaatttgtagcgtatcatttttcttttttggtgttctgaccatccatttacttctccaatttgttacag

Basic information

species Arabidopsis thaliana
transcript AT3G23310.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G23310.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G00580.2 (Glycine max), 5'ss of exon 5
TTATGAGGAAAGACACACTTACTGAAGATGAGGCAAGATTTTATGTTGGGGAAACTGTCTTAGCTATCGAGTCCATTCATAAGCACAATTATATCCACAGgtctagt-gaagcaatcaactatctgagtaaatttgtagcgtatcatttttcttttttggtgttctgaccatccatttacttctccaatttgttacag--------------------------------------------
| ||| |||| || | ||| || ||||||||||| || || ||||||||||| |||||| |||| || ||||| |||||||| || ||||||||||||||||    |  ||||  | ||  |     || || |  | |   ||  |  |    ||||      | || ||   ||     |  |    ||  |   |                                            
TGATGCGGAAGGATATACTAACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCCATAGAGTCAATTCATAAACATAATTATATCCACAGgtaagctcaaagctgtaaaaaaataacgtcaaatgatggtaaattttggtatgcttttatgacacggatcaatgatacttatggcggtcttcgtctggatcaataaatatttttaataatctgatttttaaatgcattccag

upper sequence: AT3G23310.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA10G32480.1 (Glycine max), 5'ss of exon 4
TTATGAGGAAAGACACACTTACTGAAGATGAGGCAAGATTTTATGTTGGGGAAACTGTCTTAGCTATCGAGTCCATTCATAAGCACAATTATATCCACAGgtctagtgaag---caatcaactatctgagtaaatttgtagcgtatcatttttcttttttggtgttctgaccatccatttacttctccaatttgttacag--------------------------
| ||| | || || | ||| || ||||||||||| || || ||||||||||| |||||||||||||| ||||| |||||||| || |||||||| || ||||    | |||   |||  |   || | |    ||    | | ||| || ||  | || ||||| |||     ||   || |   || ||   | || |                           
TCATGCGAAAGGATATACTGACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCTTAGCTATAGAGTCGATTCATAAACATAATTATATTCATAGgtaagctcaagcttcaaatagtcatgttacaccatgaaaatcttattatattaatcttatggtggtctttttttc---ttgcacatcaaaaaaggtataatattcttattttgatatgcattccag

upper sequence: AT3G23310.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA10G00830.1 (Glycine max), 5'ss of exon 4
TTATGAGGAAAGACACACTTACTGAAGATGAGGCAAGATTTTATGTTGGGGAAACTGTCTTAGCTATCGAGTCCATTCATAAGCACAATTATATCCACAGgtctagtgaagcaatcaactatctgagtaaatttgtagcgtatcatttttcttttttggtgttctgaccatccatttacttctccaatttgttacag--------------------------------------------
| ||| |||| || | ||| || ||||||||||| || || ||||||||||| |||||| |||| || ||||| |||||||| || |||||||| || ||||    | ||      ||  |     || || |  | |   ||  |  |    ||||        || ||   ||     |  |    || ||   |                                            
TGATGCGGAAGGATATACTCACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCCATAGAGTCAATTCATAAACATAATTATATTCATAGgtaagctcaaagctgtaaaaaataacgtcaaatgatggtaaattttgctatacttttatgacatggatcaatgatacttattgcggtcttcttctggatcaatacttaatttcaataatctgatttttaaatgcattccag

upper sequence: AT3G23310.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA20G35110.1 (Glycine max), 5'ss of exon 4
TTATGAGGAAAGACACACTTACTGAAGATGAGGCAAGATTTTATGTTGGGGAAACTGTCTTAGCTATCGAGTCCATTCATAAGCACAATTATATCCACAGgtctagtgaagcaatcaactatctgagtaaatttgtagcgtatcatttttcttttttggtgttctgaccatcc-atttacttctccaatttgttacag--------------------------
| ||| |||| || | ||| || ||| ||||||| || || ||||||||||| |||||| ||||||| ||||| |||||||| || |||||||| || ||||    | ||||    ||   ||    || |     |   | | || ||  | || ||||| |||     ||      |       ||   | || |                           
TCATGCGGAAGGATATACTGACAGAAAATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCTATAGAGTCAATTCATAAACATAATTATATTCATAGgtaagctcaagctgcaaatagtcatgttacaccatgaaaatcttatattaatcttatggtggtcttgttttcttgcacataaaaaaaaaaagatataatattctaattttgatatgcattccag

upper sequence: AT3G23310.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv05s0049g01220.t01 (Vitis vinifera), 5'ss of exon 4
TTATGAGGAAAGACACACTTACTGAAGATGAGGCAAGATTTTATGTTGGGGAAACTGTCTTAGCTATCGAGTCCATTCATAAGCACAATTATATCCACAGgtctagtgaagcaatcaactatctgagtaaatttgtagcgtat-catttttcttttttggtgttctgaccatccatttacttctcca-----atttgttacag
| ||| | || || ||  | |||||||||||||| |||||||||||||| ||||| ||| | |||||||||||||| |||||||| |||||||| || |||| | ||| |  | |  |  ||    |||  |  | | | ||| |||  ||||  |    ||   | |  | | ||   | ||||||     | || ||||||
TGATGCGAAAGGATACTTTGACTGAAGATGAGGCCAGATTTTATGTTGGTGAAACCGTCCTTGCTATCGAGTCCATCCATAAGCATAATTATATTCATAGgttt-gtgtaagattttatcatgattgtatgtgggaaccatatgcatgcttctgatc--atgacttaagaagcaataaccctctccatatttacttattacag