Sequence
atgc intronic sequence ATGC exonic sequenceGACTTGTCTGGTCGACCATATCTTGGTTACAACTTGGAGATACCAACTCAGAGAGTTGGAACATATGATACTCAGgttctctctttgctcctggaattgtcttcttttgggtttatctgtgttattcgttgtttagtaatcattgaaagtgttgccaaaaattgtttaacctttcgatttgtag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G22425.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G22425.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA20G28420.2 (Glycine max), 5'ss of exon 5
GACTTGTCTGGTCGACCATATCTTGGTTACAACTTGGAGATACCAACTCAGAGAGTTGGAACATATGATACTCAGgttctctctttgctcctggaattgtcttcttttgggtttatctgtgttattcgttgt-ttagtaatcattgaaagtgttgccaaaaattgtttaacctttcg-atttgtag---------------------------------------------------------------
|| |||||||| |||||| |||| |||| || ||||| ||||| |||||||| ||||| ||||||||||||||||| | | | ||| | |||| |||| || ||||| | || ||| | | || || || | || || || | | ||||| ||||
GATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAGgtagtgtat--gctgttt-aatta-cttcattaaagtttaga-attttgcctattgagcttctgatgtttccaaatatttttttaatgtgaatcatctttcatgcttgttccttttgtctttccctttattcttattatttactaatgaacctgctggatatcctcatttatag
upper sequence: AT3G22425.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA10G39370.1 (Glycine max), 5'ss of exon 5
GACTTGTCTGGTCGACCATATCTTGGTTACAACTTGGAGATACCAACTCAGAGAGTTGGAACATATGATACTCAGgttctctctttgctcctggaattgtctt---cttttgggtttatctgt--gttattcgttgttt---agtaatcattgaaagtgttgccaaaaattgtttaacct-ttcgatttgtag-----------------------------------------------------
|| |||||||| |||||| |||| |||| || ||||| ||||| |||||||| ||||| ||||||||||||||||| | | | | | | | || |||| | ||| || | | | ||||| | || || || || || || | | | ||| |||||
GATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAGgtagtgtatgttgtttaattacttcattaaactttggaattttgctattgagcctctgatgtttccaaatactctttttaatgtgaatcatctatcatgcttcttgttccttttgtctttccctttattcttattattactaatgaaccctctggatatcctcatttatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86080767|gb|DR376524.1|DR376524EST: GTTACAACTTGGAGATACCAACTCAGAGAGTTGGAACATATGATACTCAG TTGGTGGAGCACTTTTTCCAGTCATTGGTGAATACTTCTGGTATGACTCTT
genomic: GTTACAACTTGGAGATACCAACTCAGAGAGTTGGAACATATGATACTCAGgttctctctt ... cgatttgtagTTGGTGGAGCACTTTTTCCAGTCGTTGGTGAATACTTCTGGTATGACTCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GACTTGTCTGGTCGACCATATCTTGGTTACAACTTGGAGATACCAACTCAGAGAGTTGGAACATATGATACTCAGgttctctctttgctcctggaattgtcttcttttgggtttatctgtgttattcgttgtttagtaatcattgaaagtgttgccaaaaattgtttaacctttcgatttgtag
- - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - GGAGAT