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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGTAAGGAACATTCCTCCAGATCCTGATGAATCAGTAAGTGAGCTCGTTGAGCATTTCTTTAAGGTCAACCATCCAGACTACTACCTCACTTACCAGgtactacaactttggttgtctaacttaggatgttccatgttttcggtgtattcatcttctcgtttaacaaaacag

Basic information

species Arabidopsis thaliana
transcript AT3G21620.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G21620.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os05g51630.2 (Oryza sativa), 5'ss of exon 4
TCTTGTAAGGAACATTCCTCCAGATCCTGATGAATCAGTAAGTGAGCTCGTTGAGCATTTCTTTAAGGTCAACCATCCAGACTACTACCTCACTTACCAGgtactaca-actttggttgtctaacttaggatgttccatgt--tttcggtgtattcatcttctcg----tttaacaaaacag------------------
||||||  |||| || ||||||||||||||||||||| | ||||||||||| |||||||||||    || || ||||| ||  | || || |   |||||||| |      |     | | |   | |  | ||   ||||  ||  | ||  ||  |||||| |    || ||||   ||                   
TCTTGTGCGGAATATACCTCCAGATCCTGATGAATCAATTAGTGAGCTCGTGGAGCATTTCTTCCTTGTTAATCATCCTGATCATTATCTAAGACACCAGgtaatctttggtaaaaatttgtggataactaagtcagatgtagttctgttgcttttctcttctgggggtttcaacaggtcatcatctgcttaggtaggag

upper sequence: AT3G21620.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G43910.2 (Glycine max), 5'ss of exon 5
TCTTGTAAGGAACATTCCTCCAGATCCTGATGAATCAGTAAGTGAGCTCGTTGAGCATTTCTTTAAGGTCAACCATCCAGACTACTACCTCACTTACCAGgt-------------actacaactttggttgtctaacttaggat----gttccat-gttttcggtgtattcatct---tctcgtttaacaaaacag----
 ||||| || ||  | || || |||||||||||||| || |||||||| || || |||||||||  |||||| ||||||||  |||| |||||| | |||||               ||||| |     || |||| |  |  |    ||| ||  | ||    | |  |  | |   |   || || ||||| |     
ACTTGTTAGAAATGTACCACCTGATCCTGATGAATCGGTCAGTGAGCTAGTGGAACATTTCTTTTTGGTCAATCATCCAGATCACTATCTCACTCAGCAGgtctgatcctttctggttacaagtacacatgcctaattctgtttctctgtttcagagcttgtaatatggttttgtaatttgagtgtatcaaaatattaat