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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTACAGTGCTGGCCTAGTCAATCTTGGAAACACCTGTTACATGAACTCAACGATGCAGTGTTTAATATCTGTCCCAGAGTTGAAATCTGAATTATCCAAgtgagtatcttttaatgttccgttttaactaaaaactcatatatctcactgatgctatgtactgtcgctctctcttataaccaaaagctgattcttgatcttttcccacag

Basic information

species Arabidopsis thaliana
transcript AT3G21280.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86069923|gb|DR365680.1|DR365680
EST:     ACGATGCAGTGTTTAATATCTGTCCCAGAGTTGAAATCTGAATTATCCAA                         TTACCAATCTGCTCGAACCAAGGATGTGGATCAGACTTCTCACATGCTCAC
genomic: ACGATGCAGTGTTTAATATCTGTCCCAGAGTTGAAATCTGAATTATCCAAgtgagtatct ... tttcccacagTTACCAATCTGCTCGAACCAAGGATGTGGATCAGACTTCTCACATGCTCAC
EST: gi|19876163|gb|AU236994.1|AU236994
EST:     ACGATGCAGNGTTTAATATCTGTCCCAGAGTTGAAATCTGA-TTATCCAA                         TTACCAATCTGCTCGAACCAAGGATGTGGATCAGACTTNTNACATGCTCAC
genomic: ACGATGCAGTGTTTAATATCTGTCCCAGAGTTGAAATCTGAATTATCCAAgtgagtatct ... tttcccacagTTACCAATCTGCTCGAACCAAGGATGTGGATCAGACTTCTCACATGCTCAC