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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCGTTGTACCTTTATCCCTTCCTTAATACAACGAGTAAGTCCAGACCTTTCGAATACTTGCGGCTTACTAGCCTAGGTGTCATCGGTGCACTTGTGAAGgtacaccatcccgtcccttttctgttccttgtttctctttggttttgatgttccccacctactttttgctgaaagcaaaggactaaaaattgtgttagtggtcttggtttctaaagtagagaatttatattcttttttggtggttagtgtatgaaataagaaaggttcatcggatccttatttcactttgttttccag

Basic information

species Arabidopsis thaliana
transcript AT3G20800.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G20800.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os04g52340.1 (Oryza sativa), 5'ss of exon 7
CCCGTTGTACCTTTATCCCTTCCTTAATACAACGAGTAAGTCCAGACCTTTCGAATACTTGCGGCTTACTAGCCTAGGTGTCATCGGTGCACTTGTGAAGgtacaccatcccgtcccttttctgttccttgtttctctttggttttgatgttccccacctactttttgctgaaagcaaaggact--aaaaattgtgtta-gtggtcttggtttctaaagtagagaatttatattcttttttggtggttagtgtatgaaataagaaaggttcatcggatccttatttcactttgttttccag
 ||  ||||||| || || ||| | ||||| || || ||| | |||||||| |||||| |||| || || ||||| |||||||||||||||||||| ||||||   ||||       ||   ||      |||  || ||      | || | |  || |  | | |  |  ||   |   | |  |  |||| | ||  |   ||                                                                                               
TCCCCTGTACCTGTACCCATTCTTGAATACTACCAGCAAGACAAGACCTTTTGAATACCTGCGACTCACCAGCCTGGGTGTCATCGGTGCACTTGTTAAGgtaattcatctatgtagttacatga-----gttaatcgtttaaacag-tgatacgaacatgatatatattacaattgacacatttcagtaattctattctgccatc-----------------------------------------------------------------------------------------------

upper sequence: AT3G20800.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os07g37790.1 (Oryza sativa), 5'ss of exon 7
CCCGTTGTACCTTTATCCCTTCCTTAATACAACGAGTAAGTCCAGACCTTTCGAATACTTGCGGCTTACTAGCCTAGGTGTCATCGGTGCACTTGTGAAGgtacaccatcccgtcccttttctgttccttgtttctctttggttttgatgttccccacctactttttgctgaaagcaaaggact--aaaaattgtgtta-gtggtcttggtttctaaagtagagaatttatattcttttttggtggttagtgtatgaaataagaaaggttcatcggatccttatttcactttgttttccag
 ||  ||||||| || || ||| | ||||| || || ||| | |||||||| |||||| |||| || || ||||| |||||||||||||||||||| ||||||   ||||       ||   ||      |||  || ||      | || | |  || |  | | |  |  ||   |   | |  |  |||| | ||  |   ||                                                                                               
TCCCCTGTACCTGTACCCATTCTTGAATACTACCAGCAAGACAAGACCTTTTGAATACCTGCGACTCACCAGCCTGGGTGTCATCGGTGCACTTGTTAAGgtaattcatctatgtagttacatga-----gttaatcgtttaaccag-tgatacgaacatgatatatattacaattgacacatttcagtaattctattctgccatc-----------------------------------------------------------------------------------------------

upper sequence: AT3G20800.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os03g57130.1 (Oryza sativa), 5'ss of exon 5
CCCGTTGTACCTTTATCCCTTCCTTAATACAACGAGTAAGTCCAGACCTTTCGAATACTTGCGGCTTACTAGCCTAGGTGTCATCGGTGCACTTGTGAAGgtacaccatcccgtcccttttctgttccttgtttctctttggttttgatgttccccacctactttttgctgaaagcaaaggactaaaaattgtgttagtggtcttggtttctaaagtagagaatttatattcttttttggtggttagtgtatgaaataagaaaggttcatcggatccttatttcactttgttttccag
|||  |||| || || || ||| | ||||| || || ||| | || ||||| || |||||| ||||||| ||| | |||||||| || |||||||||||||||    ||  |   ||    || |       || |    | | | | |||    |        ||   || ||||  ||   |  |||    |    |  |||    | ||                                                                                      
CCCACTGTATCTGTACCCTTTCTTGAATACTACTAGCAAGACAAGGCCTTTTGAGTACTTGAGGCTTACCAGCTTGGGTGTCATTGGCGCACTTGTGAAGgta----attgcaagccagaactttatgaaaattatgagggatatgggtgtgtttc--------ttgagtggaagcgtagatttttaaagctagaccattttctgatctact--------------------------------------------------------------------------------------

upper sequence: AT3G20800.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA18G10400.1 (Glycine max), 5'ss of exon 5
CCCGTTGTACCTTTATCCCTTCCTTAATACAACGAGTAAGTCCAGACCTTTCGAATACTTGCGGCTTACTAGCCTAGGTGTCATCGGTGCACTTGTGAAGgtacaccatcccgtcccttttctgttccttgtttctctttggttttgatgttccccacctactttttgctgaaagcaaaggactaaaaattgtgttagtggtcttggtttctaaagtagagaatttatattcttttttggtggttagtgtatgaaataagaaaggttcatcggatccttatttcactttgttttccag
 ||  | || || |||||||||||||||||||| || ||||| ||||| || || |||||| ||||||| ||||| |||||||| |||||| | |||||||||     |||  | |   ||  |||  | | | |   |   |    |     |  |  ||  |     | ||     |     |||| || |        || | |                                                                                           
ACCTCTATATCTGTATCCCTTCCTTAATACAACAAGCAAGTCAAGACCATTTGAGTACTTGAGGCTTACCAGCCTTGGTGTCATTGGTGCATTGGTGAAGgtattttttcct-tgctcattaagttgttggatgcaaat--atcacaagaaaacaaaattatatggcaatcaatattgaa----aaaacttatcaccaaaatccttg-------------------------------------------------------------------------------------------

upper sequence: AT3G20800.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA14G02480.1 (Glycine max), 5'ss of exon 5
CCCGTTGTACCTTTATCCCTTCCTTAATACAACGAGTAAGTCCAGACCTTTCGAATACTTGCGGCTTACTAGCCTAGGTGTCATCGGTGCACTTGTGAAGgtacaccatcccgtcccttttctgttccttgtttctctttggttt--------tgatgttccccacctactttttgctgaaagcaaaggactaaaaattgtgttagtggtcttggtttctaaagtagagaatttatattcttttttggtggttagtgtatgaaataagaaaggttcatcggatccttatttcactttgttttccag
 ||  | || || |||||||||||||||||||| |||||||||||||| || || || ||| ||||||| || || || ||||| |||||  | ||||||||||  | |||  | |   |||||||  |   | | |||   | |        | || ||    ||    ||| ||||||||    |  | |   |||| |                                                                                                         
ACCTCTATATCTGTATCCCTTCCTTAATACAACCAGTAAGTCCAGACCATTTGAGTATTTGAGGCTTACCAGTCTTGGAGTCATTGGTGCCTTAGTGAAGgtactacgtcct-tgctgattctgttattgaatacacttgactatgagaagaataattttttatacaacatttatgctgaaaagggaataatttcaattat---------------------------------------------------------------------------------------------------------

upper sequence: AT3G20800.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G43220.1 (Glycine max), 5'ss of exon 5
CCCGTTGTACCTTTATCCCTTCCTTAATACAACGAGTAAGTCCAGACCTTTCGAATACTTGCGGCTTACTAGCCTAGGTGTCATCGGTGCACTTGTGAAGgtacaccatcccgtcccttttctgttccttgtttctctttggttttgatgttccccacctactttttgctgaaagcaaaggactaaaaattgtgttagtggtcttggtttctaaagtagagaatttatattcttttttggtggttagtgtatgaaataagaaaggttcatcggatccttatttcactttgttttccag
 || || || || |||||||||||||||||||| || ||||| ||||| || || |||||| ||||||| || || ||||| || |||||| | |||||||||          |  |||   || || ||   | |  |||| |   |       || |||| ||      |||  |||  |    | | | |     || |    | || ||  | |   ||| |                                                                        
ACCTTTATATCTGTATCCCTTCCTTAATACAACAAGCAAGTCAAGACCATTTGAGTACTTGAGGCTTACCAGTCTTGGTGTAATTGGTGCATTGGTGAAGgta----------tttcttccttgctcatt--ctattgttggatgcaaa------catctacatt------aaaaaaaattatatgacaatatac--atgattgatgattatatggcaagcaatat------------------------------------------------------------------------

upper sequence: AT3G20800.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G46250.1 (Glycine max), 5'ss of exon 5
CCCGTTGTACCTTTATCCCTTCCTTAATACAACGAGTAAGTCCAGACCTTTCGAATACTTGCGGCTTACTAGCCTAGGTGTCATCGGTGCACTTGTGAAGgtacaccatcccgtcccttttctgttccttgtttctctttggttttgatgttccccacctactttttgctgaaagcaaaggactaaaaattgtgttagtggtcttggtttctaaagtagagaatttatattcttttttggtggttagtgtatgaaataagaaaggttcatcggatccttatttcactttgttttccag
 ||  | || || |||||||||||||||||||| |||||||||||||| || || || ||| ||||||| |  || || ||||| |||||  | ||||||||||| | |||  | |   |||||||  |   | | ||| |  | |||        | | | |||||    ||     | | || ||||  || | | |    || |                                                                                           
ACCTCTATATCTGTATCCCTTCCTTAATACAACCAGTAAGTCCAGACCATTTGAGTATTTGAGGCTTACCACTCTTGGAGTCATTGGTGCCTTAGTGAAGgtacaacctcct-tgcagattctgttgttgaatacactt-gactatgagaag----aacaaatttttatacaacatttatg-ctgaaaagagtataatttcaattag-------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163981067|gb|ES002563.1|ES002563
EST:     TCGAATACTTGCGGCTTACTAGCCTAGGTGTCATCGGTGCACTTGTGAAG                         GTTGATAGATACAGAGGTCA
genomic: TCGAATACTTGCGGCTTACTAGCCTAGGTGTCATCGGTGCACTTGTGAAGgtacaccatc ... tgttttccagGTTGAT-GATACAGAGGTCA