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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGATTACAAAATCCTTCGAGGTGACGGAATTGCCAGgtataacaagtttatgagcatcttctgatttcattgttatagatttttcacttgctgtatattgccttgtatagtctgtcgctgttactgaaatttatatatgactttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G15980.3
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116382436|gb|EG425028.1|EG425028
EST:     ACGATTACAAAATCCTTCGAGGTGACGGAATTGCCAG                         TTAGGTCGGCCAAGTTTATTCCGCGCAAGCAATGGGTTGTGGCTGGAGCGG
genomic: ACGATTACAAAATCCTTCGAGGTGACGGAATTGCCAGgtataacaag ... gactttgcagTTAGGTCGGCCAAGTTTATTCCGCGCAAGCAATGGGTTGTGGCTGGAGCGG
EST: gi|116382435|gb|EG425027.1|EG425027
EST:     ACGATTACAAAATCCTTCGAGGTGACGGAATTGCCAG                         TTAGGTCGGCCAAGTTTATTCCGCGCAAGCAATGGGTTGTGGCTGGAGCGG
genomic: ACGATTACAAAATCCTTCGAGGTGACGGAATTGCCAGgtataacaag ... gactttgcagTTAGGTCGGCCAAGTTTATTCCGCGCAAGCAATGGGTTGTGGCTGGAGCGG
EST: gi|116382437|gb|EG425029.1|EG425029
EST:     ACGATTACAAAATCCTTCGAGGTGACGGAATTGCCAG                         TTAGGTCGGCCAAGTTTATTCCGCGCAAGCAATGGGTTGTGGCTGGAGCGG
genomic: ACGATTACAAAATCCTTCGAGGTGACGGAATTGCCAGgtataacaag ... gactttgcagTTAGGTCGGCCAAGTTTATTCCGCGCAAGCAATGGGTTGTGGCTGGAGCGG
EST: gi|116382434|gb|EG425026.1|EG425026
EST:     ACGATTACAAAATCCTTCGAGGTGACGGAATTGCCAG                         TTAGGTCGGCCAAGTTTATTCCGCGCAAGCAATGGGTTGTGGCTGGAGCGG
genomic: ACGATTACAAAATCCTTCGAGGTGACGGAATTGCCAGgtataacaag ... gactttgcagTTAGGTCGGCCAAGTTTATTCCGCGCAAGCAATGGGTTGTGGCTGGAGCGG