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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGGCTCAGACATCATCCTTAACATGCACAAGgttagttccacttaaagcagaccctgtttgacttttttttcccccgtttccattgtgtttgtttaatcacaagtctcttttactattctag

Basic information

species Arabidopsis thaliana
transcript AT3G15660.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86075951|gb|DR371708.1|DR371708
EST:     TTAAGGGAGAGTTCATTGGCGGCTCAGACATCATCCTTAACATGCACAAG                         GAAGGTGAATTGGAGCAGAAGCTTAAAGACGTCTCCGGAAACCAAGATTGA
genomic: TTAAGGGAGAGTTCATTGGCGGCTCAGACATCATCCTTAACATGCACAAGgttagttcca ... actattctagGAAGGTGAATTGGAGCAGAAGCTTAAAGACGTCTCCGGAAACCAAGATTGA
EST: gi|19874734|gb|AU235565.1|AU235565
EST:     TTAAGGGAGAGTTCATTGGCGGCTCAGACATCATCCTTAACATGCACAAG                         GAAGGTGAATTGGAGCAGAAGCTTAAAGACGTCTCCGGAAACCAAGATTGA
genomic: TTAAGGGAGAGTTCATTGGCGGCTCAGACATCATCCTTAACATGCACAAGgttagttcca ... actattctagGAAGGTGAATTGGAGCAGAAGCTTAAAGACGTCTCCGGAAACCAAGATTGA
EST: gi|125083005|gb|EL143722.1|EL143722
EST:     GGCTCAGACATCATCCTTAACATGCACAAG                         GAAGGTGAATTGGAGCAGAAGCTTAAAGACGTCTCCGGAAACCAAGATTGA
genomic: GGCTCAGACATCATCCTTAACATGCACAAGgttagttcca ... actattctagGAAGGTGAATTGGAGCAGAAGCTTAAAGACGTCTCCGGAAACCAAGATTGA
EST: gi|163996431|gb|ES125283.1|ES125283
EST:     CCTTAACATGCACAAG                         GAAGGTGAATTGGAGCAGAAGCTTAAAGACGTCTCCGGAAACCAAGATTGA
genomic: CCTTAACATGCACAAGgttagttcca ... actattctagGAAGGTGAATTGGAGCAGAAGCTTAAAGACGTCTCCGGAAACCAAGATTGA
EST: gi|86079164|gb|DR374921.1|DR374921
EST:     TTAAGGGAGAGTTCATTGGCGGCTCAGACATCATCCTTAACATGCACAAG                         GAAGGTGAATTGGAGCAGAAGCTTAAAGACGTCTCCGGAAACCAAGATTGA
genomic: TTAAGGGAGAGTTCATTGGCGGCTCAGACATCATCCTTAACATGCACAAGgttagttcca ... actattctagGAAGGTGAATTGGAGCAGAAGCTTAAAGACGTCTCCGGAAACCAAGATTGA
EST: gi|164165483|gb|EL989282.1|EL989282
EST:     ATTGGCGGCTCAGACATCATCCTTAACATGCACAAG                         GAAGGTGAATTGGAGCAGAAGCTTAAAGACGTCTCCGGAAACCAAGATTGA
genomic: ATTGGCGGCTCAGACATCATCCTTAACATGCACAAGgttagttcca ... actattctagGAAGGTGAATTGGAGCAGAAGCTTAAAGACGTCTCCGGAAACCAAGATTGA
EST: gi|86081518|gb|DR377275.1|DR377275
EST:     TTAAGGGAGAGTTCATTGGCGGCTCAGACATCATCCTTAACATGCACAAG                         GAAGGTGAATTGGAGCAGAAGCTTAAAGACGTCTCCGGAAACCAAGATTGA
genomic: TTAAGGGAGAGTTCATTGGCGGCTCAGACATCATCCTTAACATGCACAAGgttagttcca ... actattctagGAAGGTGAATTGGAGCAGAAGCTTAAAGACGTCTCCGGAAACCAAGATTGA
EST: gi|19740939|gb|AU226292.1|AU226292
EST:     TTAAGGGAGAGTTCATTGGCGGCTCAGACATCATCCTTAACATGCACAAG                         GAAGGTGAAGTTGGAGCAGAAGCTTAAAGACGTCTCCGGAAACCAAGATTG
genomic: TTAAGGGAGAGTTCATTGGCGGCTCAGACATCATCCTTAACATGCACAAGgttagttcca ... actattctagGAAGGTGAA-TTGGAGCAGAAGCTTAAAGACGTCTCCGGAAACCAAGATTG