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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTACTGATAACACACTGAAGCTTTGGGACTTGTCGATGTCTGCTTCTGGGATTAATGAATCCCCTCTTCACTCATTCACTGGACACACTAATTTAAAGgtaacattttaccctgaaatatgctttcaagactctcttcggtctccggtttctgagatgtaatgttcttgtgatgtgttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G15354.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G15354.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA06G37080.1 (Glycine max), 5'ss of exon 7
TTCTACTGATAACACACTGAAGCTTTGGGACTTGTCGATGTCTGCTTCTGGGATTAATGAATCCCCTCTTCACTCATTCACTGGACACACTAATTTAAAGgtaacattttaccctgaaatatgctttcaagactctcttcggtctccggtttctgagatgtaatgttctt------gtgatgtgttgcag----------
 || || ||||||||| ||||||||||||| ||||| |||| ||||||| |  |||  || || ||  |||| ||||||||||| || |  ||| | ||||||   || |   |   | ||   | ||    ||||      |        | ||| |   ||| |  ||       || | ||||              
ATCCACAGATAACACATTGAAGCTTTGGGATTTGTCCATGTGTGCTTCTCGAGTTATAGACTCACCAATTCAATCATTCACTGGTCATAAGAATGTTAAGgtacatttgttgacaacagtaatttgtctcttctctggaaaatgaagaagctttgaaaaaaaatatattttaaggaatggtatgttattactaggaatat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124957562|gb|EL032384.1|EL032384
EST:     GGATTAATGAATCCCCTCTTCACTCATTCACTGGACACACTAATTTAAAG                         AACTTTGTTGG
genomic: GGATTAATGAATCCCCTCTTCACTCATTCACTGGACACACTAATTTAAAGgtaacatttt ... tgtgttgcagAACTTTGTTGG