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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCAGTGGCGTGGCTTTCCTTAGTATTATATCCTGTCGGAAGAATTGTCACATATCTGTCAATGGGAATACTGAAAATTCTTGGTTTGAAAGGACGGAGgtatgcatcagtctagacttgttttaatatttgattcggtttggtggattgtcatgccttctccttggtaaaagttagcagatcctagatgtaaatcttgtggccttttttgtgtgtgtcag

Basic information

species Arabidopsis thaliana
transcript AT3G13070.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G13070.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G46780.1 (Glycine max), 5'ss of exon 5
GGCCAGTGGCGTGGCTTTCCTTAGTATTATATCCTGTCGGAAGAATTGTCACATATCTGTCAATGGGAATACTGAAAATTCTTGGTTTGAAAGGACGGAGgtatgc-atcagtctagacttgttttaatatttgattcggtttggtggat-tgtcatgccttctccttggtaaaagttagcagatcctagatgtaaatcttgtggccttttttgtgtgtgtcag
|||||||||| ||||||||| | || || |||||||| ||||||||||| || ||||| |||||||| || |||||| | |||||  | |||||| | |||| ||     |   ||| |     ||||| ||   ||     |  |  || | |      | || |||  |  | |||    ||      || | |||||                        
GGCCAGTGGCATGGCTTTCCCTGGTGTTGTATCCTGTAGGAAGAATTGTTACTTATCTTTCAATGGGGATGCTGAAATTGCTTGGCCTAAAAGGAAGAAGgtctgttgaaaagatagccagagattaatcttct-tttatcatattatatctatttcttttgcttctttatggatgttttgtgaaatctaattttaatctg-----------------------

upper sequence: AT3G13070.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA14G01920.1 (Glycine max), 5'ss of exon 5
GGCCAGTGGCGTGGCTTTCCTTAGTATTATATCCTGTCGGAAGAATTGTCACATATCTGTCAATGGGAATACTGAAAATTCTTGGTTTGAAAGGACGGAGgtatgc-atcagtctagacttgttttaatatttgattcggtttggtggat-tgtcatgccttctccttggtaaaagttagcagatcctagatgtaaatcttgtggccttttttgtgtgtgtcag
|||||||||| ||||||||||| || || || ||||| ||||||||||| || ||||| |||||||| || |||||| | |||||  | |||||| | |||| |||    |   | | |     ||||| ||   ||     |  |  || | |      | || |||  || | |||    ||      || | |||||                        
GGCCAGTGGCATGGCTTTCCTTGGTGTTGTACCCTGTAGGAAGAATTGTTACCTATCTTTCAATGGGGATGCTGAAATTGCTTGGCCTAAAAGGAAGAAGgtctgctgaaaagattgccagagattaatcttct-tttatcatattatatctatttcttttgcttctttatagatgttttgtgaaatctaattttaatctg-----------------------

upper sequence: AT3G13070.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv19s0090g01820.t01 (Vitis vinifera), 5'ss of exon 5
GGCCAGTGGCGTGGCTTTCCTTAGTATTATATCCTGTCGGAAGAATTGTCACATATCTGTCAATGGGAATACTGAAAATTCTTGGTTTGAAAGGACGGAGgtatgcatcagtctagacttgttttaatatttgattcggtttggtggattgtcatgccttctccttggtaaaagttagcagatcctagatgtaaatcttgtggccttttttgtgtgtgtcag
||||||||||||||||||| ||  ||||||||||||| |||||  ||||||| ||| | ||||||||||| || ||||| ||||||||||||||| | |||| ||        ||    |   |  || || ||||   |||     | | ||||||||||         |  | | ||| ||  |     |     ||   |  ||| |  | | |     
GGCCAGTGGCGTGGCTTTCGTTTATATTATATCCTGTGGGAAGGGTTGTCACGTATTTATCAATGGGAATGCTAAAAATGCTTGGTTTGAAAGGAAGAAGgtgtgt-------tatgtataactgcattttggattttcttt-----actttcatgccttccttc-----attggttgcatattttgtccattggcttttaagattttctattttat-----