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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTACGTTTGTAAGATGGAAAATGCACTTCGCAAGTACATTGCAACCAGTCATCGACCCCAAGGGCCCACATTATCTGCTGTAAGCTTAATGAAAAAGgtgagatgttagtgtttttttttacctgctctgagttcagttctctggtcaagtgctggatagattgttccctgcaaatatctgtttgtgaaatctcaatgaatatgccttgtttgacccacccttgtcttatcccacag

Basic information

species Arabidopsis thaliana
transcript AT3G13062.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125315115|gb|EL329200.1|EL329200
EST:     ACATTATCTGCTGTAAGCTTAATGTAAAAAG                         ATTCCATCGGAGTTAGAAAGTCAGACAGACGACATTACAAACTCCTCGGG
genomic: ACATTATCTGCTGTAAGCTTAATG-AAAAAGgtgagatgtt ... tatcccacagATTCCATCGGAGTTAGAAAGTCAGACAGACGACATTACAAACTCCTCGGG
EST: gi|164068647|gb|ES107074.1|ES107074
EST:     AAGCTTAATG-AAAAG                         ATTCCATCGGAGTTAGAAAGTCAGACAGACGACATTACAAACTCCTCGGGA
genomic: AAGCTTAATGAAAAAGgtgagatgtt ... tatcccacagATTCCATCGGAGTTAGAAAGTCAGACAGACGACATTACAAACTCCTCGGGA
EST: gi|116484403|gb|EG526995.1|EG526995
EST:     GTCATCGACCCCAAGGGCCCACATTATCTGCTGTAAGCTTAATGAAAAAG                         ATTCCATCGGAGTTAGAAAGTCAGACAGACGACATTACAAACTCCTCGGGA
genomic: GTCATCGACCCCAAGGGCCCACATTATCTGCTGTAAGCTTAATGAAAAAGgtgagatgtt ... tatcccacagATTCCATCGGAGTTAGAAAGTCAGACAGACGACATTACAAACTCCTCGGGA