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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCGGAAGTACTACTCACATAAGTATATCATTCTCGCGGTGAACAAGTGTGAATCGCCACGTAAAGGACTCATGCAGGCTTCGGAATTTTGGTCTCTAGGgtaaattgactttcatcctacttcagaatcatgtttgcgcacaaagtaggcttgttttggggaaatgtggtttaaggataaaaacgtgctgaaaataaga...

Basic information

species Arabidopsis thaliana
transcript AT3G12080.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G12080.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA12G06150.1 (Glycine max), 5'ss of exon 5
TGCGGAAGTACTACTCACATAAGTATATCATTCTCGCGGTGAACAAGTGTGAATCGCCACGTAAAGGACTCATGCAGGCTTCGGAATTTTGGTCTCTAGGgtaaattgactttcatcctacttcagaatcatgtttgcgcacaaagtaggcttgttttggggaaatgtggtttaaggataaaaacgtgctgaaaataaga-------
| || ||  |||||||| |||| ||| ||||||| || || |||||||||||||| ||||| ||| || | |||||||| || ||||||||||| || ||||||  | | | |  |     | ||    |  ||  | |  ||   ||  | ||  |    ||| |||||    ||   ||||  ||  ||| | | |         
TACGTAAAAACTACTCAGATAAATATGTCATTCTTGCAGTTAACAAGTGTGAATCTCCACGCAAAAGAATTATGCAGGCATCTGAATTTTGGTCCCTTGGgtaagctaattct-gtgaggatgcactcccgagtgggtgggcaggtta--catgcct----gaagtgtggccatagtggaaaatggtcatgacacttaagtagttta

upper sequence: AT3G12080.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA11G14170.1 (Glycine max), 5'ss of exon 2
TGCGGAAGTACTACTCACATAAGTATATCATTCTCGCGGTGAACAAGTGTGAATCGCCACGTAAAGGACTCATGCAGGCTTCGGAATTTTGGTCTCTAGGgtaaattgacttt-----catcctacttca---gaatcatgtttgcgcacaaagtaggcttgttt-tggggaaatgtggtttaaggataaaaacgtgctgaaaataaga
| || ||  | |||||| |||| ||| ||||||| || || |||||||||||||| ||||| ||| || | |||||||| || ||||||||||| || ||||||  |   | |      || |  |  ||   || |    |||     ||||     |     | |  | | |  |   || | | |       || |          
TACGTAAAAAATACTCAGATAAATATGTCATTCTTGCAGTTAACAAGTGTGAATCTCCACGCAAAAGAATTATGCAGGCGTCTGAATTTTGGTCCCTTGGgtaagctacttctgagaggatgcacccccaagtgagtggaatttcacttcaaaaggaccacacatataagaatagatcacttcaagctttctttttgatc---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124771905|gb|EH862035.1|EH862035
EST:     GGAATTTTGGTCTCTAGG                         GTTCACACCTATCCCTATCTCTGCATTGTCGGGAACTGGAACAGGAGAGCT
genomic: GGAATTTTGGTCTCTAGGgtaaattgac ... gaatttccagGTTCACACCTATCCCTATCTCTGCATTGTCGGGAACTGGAACAGGAGAGCT