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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGAAGTTTTTTGAAGGGACAGCTGAGCAGATGTATCAGTCGTTGTGTGTGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAGgtaaaaaaatcaacagcttcattatgtcttttgagttcttaactcataaaaatggatgcctataaactgaataatccgctattcatttcttatggttctcag

Basic information

species Arabidopsis thaliana
transcript AT3G10850.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86081524|gb|DR377281.1|DR377281
EST:     TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAG                         TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
genomic: TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
EST: gi|125317870|gb|EL331955.1|EL331955
EST:     TACCTAAACCGACACAGG-TTACTGCGGCCATGAG                         TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
genomic: TACCTAAACCGACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
EST: gi|86023772|gb|DR319525.1|DR319525
EST:     TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAG                         TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAA
genomic: TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAA
EST: gi|125324817|gb|EL338897.1|EL338897
EST:     GGTTTACTGCGGCCATGAG                         TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
genomic: GGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
EST: gi|124840531|gb|EH924970.1|EH924970
EST:     TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGA-                         TACACCGTTAAGAACTTGGAATTTG
genomic: TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTG
EST: gi|124846207|gb|EH930644.1|EH930644
EST:     CTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAG                         TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
genomic: CTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
EST: gi|19742495|gb|AU227848.1|AU227848
EST:     CTGCGCCCATGAG                         TACACCGTTAAGAACTTGGAATTTGCTCTAACTTTGGAACGAAACAACGGG
genomic: CTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
EST: gi|125100227|gb|EL155761.1|EL155761
EST:     CACAGGTTTACTGCGGCCATGAG                         TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
genomic: CACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
EST: gi|124918016|gb|EH991890.1|EH991890
EST:     CTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAG                         TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
genomic: CTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
EST: gi|124935905|gb|EL012853.1|EL012853
EST:     ACACAGGTTTACTGCGGCCATGAG                         TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
genomic: ACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
EST: gi|86027936|gb|DR323689.1|DR323689
EST:     TGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAG                         TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
genomic: TGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
EST: gi|164155464|gb|ES136586.1|ES136586
EST:     GACTCTGGCTGCATTACCTAAACCGTACACAGGTTTACTGCGGCCATGAG                         TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
genomic: GACTCTGGCTGCATTACCTAAACCG-ACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
EST: gi|125034538|gb|EL106807.1|EL106807
EST:     ACCTAAACCGACACAGGTTTACTGCGGCCATGAG                         TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
genomic: ACCTAAACCGACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
EST: gi|86076505|gb|DR372262.1|DR372262
EST:     TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAG                         TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
genomic: TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
EST: gi|124846601|gb|EH931038.1|EH931038
EST:     TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCNTGAG                         TACACCGTTAAGAACTTGGAATTTGCTCT
genomic: TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCT
EST: gi|125203437|gb|EL218391.1|EL218391
EST:     GACACAGGTTTACTGCGGCCATGAG                         TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
genomic: GACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
EST: gi|124812364|gb|EH897230.1|EH897230
EST:     TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAG                         TAACAACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGA
genomic: TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTA-CA-CCGTTAAGAACTTGGAATTTGCTCTAACTGTGGA
EST: gi|86078227|gb|DR373984.1|DR373984
EST:     TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAG                         TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
genomic: TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG