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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTGGGAAAGATGAAGAAATCAATCTTCTTGGCGATGGTACTGAGAAACCTGAGTTTGGTGAATGGTCCTGGACTTCTCCTGATCAAGTCGTTGAAAATgtacgtacagttttcttctctctgtttgaccttcagcatttagattccacgactactctttcactcatattcattctatttctgttatacag

Basic information

species Arabidopsis thaliana
transcript AT3G10620.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G10620.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA10G33990.1 (Glycine max), 5'ss of exon 5
TACTGGGAAAGATGAAGAAATCAATCTTCTTGGCGATGGTACTGAGAAACCTGAGTTTGGTGAATGGTCCTGGACTTCTCCTGATCAAGTCGTTGA------AAATgtacgtacagttttcttctctctgtttgaccttcagcatttagattccacgac-tactctttcactcat-attcattctatttctgttatacag
 |||||| ||||| ||||||| |||||| | || ||||||||||||||| |||||||||| |||||||| ||||  || ||||| |||||  ||||      || | |||||   | |  |  || | |   |     ||   |   |  |   | |   |||| |   |   || | |   | | | |   || | |||
CACTGGGCAAGATCAAGAAATTAATCTTTTGGGTGATGGTACTGAGAAAGCTGAGTTTGGGGAATGGTCATGGATATCACCTGAACAAGTAATTGAGCTTgtaagtatacgtgatgatgacaacttttttcatacttgtccaaagccaattaagatggggtactgtacaatatatgacttggtttgtcttctttgtgcag

upper sequence: AT3G10620.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA20G33600.1 (Glycine max), 5'ss of exon 5
TACTGGGAAAGATGAAGAAATCAATCTTCTTGGCGATGGTACTGAGAAACCTGAGTTTGGTGAATGGTCCTGGACTTCTCCTGATCAAGTCGTTGAAAATgtacgtac--agttttcttctctctgtttgaccttcagcatttagattccacgactactctttcactcat--attcattctatttctgttatacag
 |||||  ||||| ||||||| |||||| | || ||||||||||||||| |||||||||| |||||||| ||||  || ||||| |||||  ||||   |||| |||   ||| | | |     ||       ||   |||     | | | | | | |     |   ||  | |   | ||| | |  | | |||
CACTGGACAAGATCAAGAAATTAATCTTTTGGGTGATGGTACTGAGAAAGCTGAGTTTGGGGAATGGTCATGGATATCACCTGAACAAGTAATTGAGCTTgtaagtattaagtatacgtgataatgacaactttttttcatacttgtccaaagccaagtagacaatatatgaactttgtttatcttttctgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86072998|gb|DR368755.1|DR368755
EST:     CTGAGTTTGGTGAATGGTCCTGGACTTCTCCTGATCAAGTCGTTGAAAAT                         GCAGTGGAGTTCAAGAAGCCAGTGTACAAGGAAGTCATGTCAGCTTTCGCT
genomic: CTGAGTTTGGTGAATGGTCCTGGACTTCTCCTGATCAAGTCGTTGAAAATgtacgtacag ... tgttatacagGCAGTGGAGTTCAAGAAGCCAGTGTACAAGGAAGTCATGTCAGCTTTCGCT
EST: gi|164113135|gb|ES115537.1|ES115537
EST:     TTGGTGAATGGTCCTGGACTTCTCCTGATCAAGTCGTTGAAAAT                         GCAGTGGAGTTCAAGAAGCCAGTGTACAAGGAAGTCATGTCAGCTTTCGCT
genomic: TTGGTGAATGGTCCTGGACTTCTCCTGATCAAGTCGTTGAAAATgtacgtacag ... tgttatacagGCAGTGGAGTTCAAGAAGCCAGTGTACAAGGAAGTCATGTCAGCTTTCGCT
EST: gi|124797203|gb|EH886882.1|EH886882
EST:     GGTGAATGGTCCTGGACTTCTCCTGATCAAGTCGTTGAAAAT                         GCAGTGGAGTTCAAGAAGCCAGTGTACAAGGAAGTCATGTCAGCTTTCGCT
genomic: GGTGAATGGTCCTGGACTTCTCCTGATCAAGTCGTTGAAAATgtacgtacag ... tgttatacagGCAGTGGAGTTCAAGAAGCCAGTGTACAAGGAAGTCATGTCAGCTTTCGCT