1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATCGCGGAATCACTGCCTCGGATCTGCTTCTTATCTGGTTTGACAGGAGAGGAGATGATGATGTTCATTGATGCATTCCCAGAAACTGgtacctacaatacaaattcaaaatgaaacaataaaagggagactttaatgcatgtcattttaaaaagtggtggatcaaatgcag
species | Arabidopsis thaliana |
transcript | AT3G10405.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTTGACAGGAGAGGAGATGATGATGTTCATTGATGCATTCCCAGAAACTG GGCTGGAACCAGTTGTGTTTGCAGCTATGGTTCCGAACAGTGEST: gi|116463250|gb|EG505842.1|EG505842
genomic: TTTGACAGGAGAGGAGATGATGATGTTCATTGATGCATTCCCAGAAACTGgtacctacaa ... tcaaatgcagGGCTGGAACCAGTTGTGTTTGCAGCTATGGTTCCGAACAGTG
EST: TTTGACAGGAGAGGAGATGATGATGTTCATTGATGCATTCCCAGAAGCTG GGCTGGAACCAGTTGTGTTTGCAGCTATGGTTCCGAACAGTGCTGATAAACEST: gi|124732748|gb|EH824150.1|EH824150
genomic: TTTGACAGGAGAGGAGATGATGATGTTCATTGATGCATTCCCAGAAACTGgtacctacaa ... tcaaatgcagGGCTGGAACCAGTTGTGTTTGCAGCTATGGTTCCGAACAGTGCTGATAAAC
EST: TTGACAGGAGAGGAGATGATGATGTTCATTGATGCATTCCCAAGAAACTG GGCTGGAACCAGTTGTGTTTGCAGCTATGGTTCCGAACAGTGEST: gi|86076630|gb|DR372387.1|DR372387
genomic: TTGACAGGAGAGGAGATGATGATGTTCATTGATGCATTCCC-AGAAACTGgtacctacaa ... tcaaatgcagGGCTGGAACCAGTTGTGTTTGCAGCTATGGTTCCGAACAGTG
EST: TTTGACAGGAGAGGAGATGATGATGTTCATTGATGCATTCCCAGAAACTG GGCTGGAACCAGTTGTGTTTGCAGCTATGGTTCCGAACAGTGCTGATAAACEST: gi|86051116|gb|DR346871.1|DR346871
genomic: TTTGACAGGAGAGGAGATGATGATGTTCATTGATGCATTCCCAGAAACTGgtacctacaa ... tcaaatgcagGGCTGGAACCAGTTGTGTTTGCAGCTATGGTTCCGAACAGTGCTGATAAAC
EST: TTTGACAGGAGAGGAGATGATGATGTTCATTGATGCATTCCCAGAAACTG GGCTGGAACCAGTTGTGTTTGCAGCTATGGTTCCGAACAGTGCTGATAAACEST: gi|124841210|gb|EH925649.1|EH925649
genomic: TTTGACAGGAGAGGAGATGATGATGTTCATTGATGCATTCCCAGAAACTGgtacctacaa ... tcaaatgcagGGCTGGAACCAGTTGTGTTTGCAGCTATGGTTCCGAACAGTGCTGATAAAC
EST: TTTGACAGGAGAGGAGATGATGATGTTCATTGATGCATTCCCAGAAACTG GGCTGGAACCAGTTGTGTTTGCAGCTATGGTTCCGAACAGTG
genomic: TTTGACAGGAGAGGAGATGATGATGTTCATTGATGCATTCCCAGAAACTGgtacctacaa ... tcaaatgcagGGCTGGAACCAGTTGTGTTTGCAGCTATGGTTCCGAACAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCGCGGAATCACTGCCTCGGATCTGCTTCTTATCTGGTTTGACAGGAGAGGAGATGATGATGTTCATTGATGCATTCCCAGAAACTGgtacctacaatacaaattcaaaatgaaacaataaaagggagactttaatgcatgtcattttaaaaagtggtggatcaaatgcag
- - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - GAGATG