1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTAGATAAGGGAAGAGTGGTAATATTTGGTGGCATCGGTGCCACGCTTGGAAATCCACTTTTATCATCTGATGCATCTGCAGCCCTTCGAGCTATAGACAgtacaactctcttacttcctcttagtgttgttctctttccattagtaactggtcctaagtggtaacctaagatctcttgttatcag
species | Arabidopsis thaliana |
transcript | AT3G10030.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCCTTCGAGCTATAGACA TCAATGCGGAGGCAGTGGTGAAAGGAACAAACGTTGATGGTGTTTATGACTEST: gi|116425761|gb|EG468353.1|EG468353
genomic: CCCTTCGAGCTATAGACAgtacaactct ... ttgttatcagTCAATGCGGAGGCAGTGGTGAAAGGAACAAACGTTGATGGTGTTTATGACT
EST: AAATCCACTTTTATCATCTGATGCATCTGCAGCCCTTCGAGCTATAGACA TCAATGCGGAGGCAGTGGTGAAAGGAACAAACGTTGATGGTGTTTATGACT
genomic: AAATCCACTTTTATCATCTGATGCATCTGCAGCCCTTCGAGCTATAGACAgtacaactct ... ttgttatcagTCAATGCGGAGGCAGTGGTGAAAGGAACAAACGTTGATGGTGTTTATGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTAGATAAGGGAAGAGTGGTAATATTTGGTGGCATCGGTGCCACGCTTGGAAATCCACTTTTATCATCTGATGCATCTGCAGCCCTTCGAGCTATAGACAgtacaactctcttacttcctcttagtgttgttctctttccattagtaactggtcctaagtggtaacctaagatctcttgttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG