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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTAGCAGATGTTATCAACATAGTTCTCGACCCCATCTTCATTTTTGTGCTTCGTCTAGGGATCATCGGTGCAGCCATTGCCCATGTCATTTCTCAgtaagagaaatcactaaaaaaattccacacatgcaaaagtgatcattattgaacaaaatcgctaggcgcactcttgtttttctacagctataaatagacttgtgaagtcataacctcaaacaaaaacaaatgatttgtttgtgtacgtgaag

Basic information

species Arabidopsis thaliana
transcript AT3G08040.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G08040.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv13s0064g00930.t01 (Vitis vinifera), 5'ss of exon 6
TCGTAGCAGATGTTATCAACATAGTTCTCGACCCCATCTTCATTTTTGTGCTTCGTCTAGGGATCATCGGTGCAGCCATTGCCCATGTCATTTCTCAgtaagagaaatcactaaaaaaat-tccacacatgcaaaagtgatcattattgaacaaaatcgctaggcgcactcttgtttttctacagctataaatagacttgtgaagtcataacctcaaacaaaaacaaatgatttgtttgtgtacgtgaag
| | || |||| | |  |||||  || | ||||| || || ||||||||    ||| | || |||| ||| ||||||||||||||||| |||||||||||||    |  |||  || | | ||||   || | | |   || ||| ||  |  |  || |||    |  | | || ||  |  |    |  ||  |  |    |||  ||   ||  | |  | ||| |  ||| | | | ||       
TTGCAGGAGATCTAACAAACATCATTTTGGACCCGATATTTATTTTTGTTTGCCGTTTGGGCATCAGCGGCGCAGCCATTGCCCATGTTATTTCTCAgtaagttttactacttcaagattatccatcaatactaca--tataattttt--atgagttcactaaat-ctttttggtcttgatttaatatttgattcatcta--gagtggta-tttctgatatgatcaactacttt-tctctatag------

upper sequence: AT3G08040.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv13s0064g00940.t01 (Vitis vinifera), 5'ss of exon 7
TCGTAGCAGATGTTATCAACATAGTTCTCGACCCCATCTTCATTTTTGTGCTTCGTCTAGGGATCATCGGTGCAGCCATTGCCCATGTCATTTCTCAgtaagagaaatcactaaaaaaattccacacatgcaaaagtgatcattattgaacaaaatcgctaggcgcactcttgtttttctacagctataaatagacttgtgaagtcataacctcaaacaaaaacaaatgatttgtttgtgtacgtgaag
| || | |||| | |  || ||  || | || || || || || || ||        | ||| ||| ||| |||||||||||||||||||||||||||||||     |  ||  || |        ||| |  |||    || |  |       |||  | |   || | ||   | |        |||||| | | |    ||       |||  |||  |  ||||  ||| | | |          
TGGTGGGAGATCTAACAAATATCATTTTGGATCCAATATTTATCTTCGTTTGCAAGTTGGGGGTCAGCGGCGCAGCCATTGCCCATGTCATTTCTCAgtaagtt---ttgcttcaagaccattgttcat-ctcaagcttccaatcctttttggtatc-ttcgattcattgttacatctta------ataaatggcccttctgag-------ctctcacatgactaaat--tttctctatag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86068041|gb|DR363798.1|DR363798
EST:     GNGCTTCGTCTAGGGATCATCGGNGCAGCCATTGCCCATGTCATTTCTCA                         GTACTTCATGACTCTAATATTGTTCGTCTTCCTCGCAAAGAAAGTTAATTT
genomic: GTGCTTCGTCTAGGGATCATCGGTGCAGCCATTGCCCATGTCATTTCTCAgtaagagaaa ... gtacgtgaagGTACTTCATGACTCTAATATTGTTCGTCTTCCTCGCAAAGAAAGTTAATTT