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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACAgtaagaattttcttctcgaggatttatatcagttgagaacatctttgttgatcgttatttacctctttattaaatttatgcttattccatatattctgta...

Basic information

species Arabidopsis thaliana
transcript AT3G06670.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116424226|gb|EG466818.1|EG466818
EST:     GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACA                         GCGAAACATTTCACAGCTTGAACAGT
genomic: GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACAgtaagaattt ... gattgaacagGCGAAACATTTCACAGCTTGAACAGT
EST: gi|116427932|gb|EG470524.1|EG470524
EST:     GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACA                         GCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
genomic: GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACAgtaagaattt ... gattgaacagGCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
EST: gi|116447731|gb|EG490323.1|EG490323
EST:     GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACA                         GCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
genomic: GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACAgtaagaattt ... gattgaacagGCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
EST: gi|116423237|gb|EG465829.1|EG465829
EST:     GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACA                         GCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
genomic: GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACAgtaagaattt ... gattgaacagGCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
EST: gi|116412443|gb|EG455035.1|EG455035
EST:     GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAACTCTCTAAACA                         GCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
genomic: GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACAgtaagaattt ... gattgaacagGCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
EST: gi|116411545|gb|EG454137.1|EG454137
EST:     GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACA                         GCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
genomic: GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACAgtaagaattt ... gattgaacagGCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
EST: gi|116407356|gb|EG449948.1|EG449948
EST:     GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACA                         GCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
genomic: GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACAgtaagaattt ... gattgaacagGCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
EST: gi|116449069|gb|EG491661.1|EG491661
EST:     GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACA                         GCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
genomic: GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACAgtaagaattt ... gattgaacagGCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
EST: gi|116413313|gb|EG455905.1|EG455905
EST:     GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACA                         GCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
genomic: GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACAgtaagaattt ... gattgaacagGCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
EST: gi|116444990|gb|EG487582.1|EG487582
EST:     GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACA                         GCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
genomic: GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACAgtaagaattt ... gattgaacagGCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
EST: gi|116449085|gb|EG491677.1|EG491677
EST:     GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAACTCTCTAAACA                         GCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
genomic: GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACAgtaagaattt ... gattgaacagGCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
EST: gi|116449109|gb|EG491701.1|EG491701
EST:     GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACA                         GCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
genomic: GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACAgtaagaattt ... gattgaacagGCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
EST: gi|116428347|gb|EG470939.1|EG470939
EST:     GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACA                         GCGAAGCATTTCACAGCT
genomic: GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACAgtaagaattt ... gattgaacagGCGAAACATTTCACAGCT
EST: gi|116432099|gb|EG474691.1|EG474691
EST:     GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACA                         GCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
genomic: GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACAgtaagaattt ... gattgaacagGCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
EST: gi|116407371|gb|EG449963.1|EG449963
EST:     GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACA                         GCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
genomic: GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACAgtaagaattt ... gattgaacagGCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
EST: gi|116417526|gb|EG460118.1|EG460118
EST:     GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACA                         GCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
genomic: GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACAgtaagaattt ... gattgaacagGCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
EST: gi|116448708|gb|EG491300.1|EG491300
EST:     GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACA                         GCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
genomic: GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACAgtaagaattt ... gattgaacagGCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
EST: gi|116411537|gb|EG454129.1|EG454129
EST:     GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACA                         GCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
genomic: GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACAgtaagaattt ... gattgaacagGCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
EST: gi|116426306|gb|EG468898.1|EG468898
EST:     GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACA                         GCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
genomic: GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACAgtaagaattt ... gattgaacagGCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
EST: gi|116449103|gb|EG491695.1|EG491695
EST:     GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACA                         GCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
genomic: GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACAgtaagaattt ... gattgaacagGCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
EST: gi|116460005|gb|EG502597.1|EG502597
EST:     GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACA                         GCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
genomic: GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACAgtaagaattt ... gattgaacagGCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
EST: gi|116434816|gb|EG477408.1|EG477408
EST:     GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACA                         GCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
genomic: GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACAgtaagaattt ... gattgaacagGCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
EST: gi|116379504|gb|EG422096.1|EG422096
EST:     G-ATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACA                         GCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG
genomic: GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACAgtaagaattt ... gattgaacagGCGAAACATTTCACAGCTTGAACAGTGAGTTGAGGGAGCTTCCTGCTGTAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGATCAAATCTGCACTATGCAACGAAATTTGCATTTCAGCTCTCTAAACAgtaagaattttcttctcgaggatttatatcagttgagaacatctttgttgatcgttatttacctctttattaaatttatgcttattccatatattctgta

- - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - CAGCTC