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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTGGGTTGTCAAGTTCTGCTGCATTTGTTTGCTCAGCAACAATTGCTATTATGGCTGTCTTTGGTCATAACTTTGAGAAGgtattattaagcaatcgtgctctgtgaaaggactttcataaatctcttgttgattattgaaatttccaagttctctctgcctttcag

Basic information

species Arabidopsis thaliana
transcript AT3G06580.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G06580.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA07G36610.1 (Glycine max), 5'ss of exon 5
GTTCTGGGTTGTCAAGTTCTGCTGCATTTGTTTGCTCAGCAACAATTGCTATTATGGCTGTCTTTGGTCATAACTTTGAGAAGgtat---tattaagcaatcgtgc-------tctgtgaaaggactttcataaatctcttgttgattattgaaatttccaagttctctctgcctttcag---
|||||||  | ||||| ||||| |||||||| |||||| | |||||||||||||||||||  |||| |   |||||   ||||||||   |  |  || |   |||       || |||  |    ||    | | |   |  || | | |||   ||  | |       ||  |        
GTTCTGGACTATCAAGCTCTGCAGCATTTGTCTGCTCATCCACAATTGCTATTATGGCTGCTTTTGATGTGAACTTCCCGAAGgtatgccttctgggctagaatgcacatgtgtcggtgttatagtttgtgcagagcaaattatgttcagtgagcgttgaatggataaattgtttgcatatat

upper sequence: AT3G06580.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA17G03990.1 (Glycine max), 5'ss of exon 5
GTTCTGGGTTGTCAAGTTCTGCTGCATTTGTTTGCTCAGCAACAATTGCTATTATGGCTGTCTTTGGTCATAACTTTGAGAAGgtat---tattaagcaatcgtgctct-gtgaaaggactttcataaatctcttgttgattattgaaatttccaagttctctctgcctttcag-----------
|||||||  | ||||| ||||| || ||||| |||||| | |||||||||||||||||||  |||| |   |||||    ||||||    | ||   |   |  || || |||   |     |  |   |   |||| ||  |   |   |   ||| |||  |||    |              
GTTCTGGACTATCAAGCTCTGCAGCGTTTGTCTGCTCATCCACAATTGCTATTATGGCTGCTTTTGATGTGAACTTCCCAAAGgtacgccttttggactggcaagcactagtgtgtgtgtaatagtttgtgctttgtggagca--aattctgttaagctcttgctgagcattgaatggataaatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125124914|gb|EL170614.1|EL170614
EST:     CAACAATTGCTATTATGGCTGTCTTTGGTCATAACTTTGAGAAG                         AAAGAACTTGCACAGCTTACATGTGAATGTGAAAGACACATTGGAACACAA
genomic: CAACAATTGCTATTATGGCTGTCTTTGGTCATAACTTTGAGAAGgtattattaa ... tgcctttcagAAAGAACTTGCACAGCTTACATGTGAATGTGAAAGACACATTGGAACACAA
EST: gi|124740007|gb|EH831169.1|EH831169
EST:     GCTCAGCAACAATTGCTATTATGGCTGTCTTTGGTCATAACTTTGAGAAG                         AAAGAACTTGCACAGCTTACATGTGAA
genomic: GCTCAGCAACAATTGCTATTATGGCTGTCTTTGGTCATAACTTTGAGAAGgtattattaa ... tgcctttcagAAAGAACTTGCACAGCTTACATGTGAA