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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAGAGAATCTAAGGCATATGGAGACATTCAGTTTATGCCATTTGTTGACTACTATGGTTTACTTAGCTTGAAAACAGTTGCGCTTTGCATTCTCGGGgtaagctactagtagtttacacaaacatagaaactatgagatatcacttcttgccttgtcttggttaatccctctctgatggatgtttctccatgttgatacag

Basic information

species Arabidopsis thaliana
transcript AT3G06440.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G06440.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv05s0020g00400.t01 (Vitis vinifera), 5'ss of exon 5
GTGGAGAGAATCTAAGGCATATGGAGACATTCAGTTTATGCCATTTGTTGACTACTATGGTTTACTTAGCTTGAAAACAGTTGCGCTTTGCATTCTCGGGgtaagctactagtagtttacacaaacatagaaactatgagatatcacttcttgccttgtcttggttaatccctctctgatggatgtttctccatgttgatacag--
|||||||||| || | |||||||||||||| ||||| ||||| |||||||| || ||  |  |  | || ||||| ||| ||||    |||||| | |||||| |    || ||      | | | || |   || |    | |        |  |     |  | ||     ||    |  |   ||     |   |||  ||  
GTGGAGAGAAGCTCAAGCATATGGAGACATCCAGTTGATGCCTTTTGTTGATTATTACAGCCTTATCAGTTTGAAGACAATTGCAACCTGCATTATGGGGgtatgtagataata-----taaagagattgctgctttctatttttgtgagcagaatgactgtcataaacttaacttcagtacagagttgaa-gttaggatttagat