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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGGTCCCCCAGGGACTGGTAAAACTTTAATGGCTCGTGCCTGCGCAGCACAGACCAATGCCACCTTCCTTAAATTGGCAGGCCCTCAATTGGTCCAGgtatatatatatatatatatatatatatatatgagtatcagattcaattctcatctcttagaactctttaccctgtctggatataagattttagtgttctggcaacaataattacatgtgacgagctataatgatacttgattgtaatgacatgatgacatatccaatttatatacag

Basic information

species Arabidopsis thaliana
transcript AT3G05530.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G05530.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 5
GTATGGTCCCCCAGGGACTGGTAAAACTTTAATGGCTCGTGCCTGCGCAGCACAGACCAATGCCACCTTCCTTAAATTGGCAGGCCCTCAATTGGTCCAGgtatatatatatatatat-atatatatatatatgagtatcagattcaattctcatctcttagaactctttaccctgtctggatataagattttagtgttctggcaacaataattacatgtgacgagctataatgatacttgattgtaatgacatgatgacatatccaatttatatacag
|||||| ||||| |||||||| |||||  | ||||||||||| ||||| |||||||| ||||| || || || |||||||| || || ||| | |||||||||  ||  || ||   | | |||||| ||||    |   ||  |           || ||   ||||  | |    |   || | ||  |||    |||||      ||  || |                                                               
GTATGGACCCCCTGGGACTGGGAAAACGCTCATGGCTCGTGCATGCGCTGCACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgtaggtaattaaatccgtgaaatatat-tatacagatgctagggt-----------tcctaaggctctccaactaacc---atttgagcattttacattctgtttgtgat--ttgcg--------------------------------------------------------------

upper sequence: AT3G05530.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA20G38030.1 (Glycine max), 5'ss of exon 5
GTATGGTCCCCCAGGGACTGGTAAAACTTTAATGGCTCGTGCCTGCGCAGCACAGACCAATGCCACCTTCCTTAAATTGGCAGGCCCTCAATTGGTCCAGgtatatatatatatatatatatatatatatatgagtatcagattcaattctcatctcttagaactctttaccctgtctggatataagattttagtgttctggcaacaataattacatgtgacgagctataatgatacttgattgtaatgacatgatgacatatccaatttatatacag
|||||| || ||||||||||| ||||| || |||||||||||||| ||||||||||| |||||||| || || |||||||| ||||||||| ||||||||||||    || ||| ||||    | ||   |||| ||   ||||| | | | |  | || | |             ||   ||||  ||| |    |  | | |||| |                                                                     
GTATGGACCTCCAGGGACTGGGAAAACATTGATGGCTCGTGCCTGTGCAGCACAGACAAATGCCACTTTTCTGAAATTGGCTGGCCCTCAACTGGTCCAGgtatgacaatttatttata---gtctaagcatgactaat-gattctactattacatgtttgtatc---------aactaattatatcattattacatgttcgtaacattttcc-----------------------------------------------------------------

upper sequence: AT3G05530.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA10G29250.1 (Glycine max), 5'ss of exon 5
GTATGGTCCCCCAGGGACTGGTAAAACTTTAATGGCTCGTGCCTGCGCAGCACAGACCAATGCCACCTTCCTTAAATTGGCAGGCCCTCAATTGGTCCAGgtatatatatatatatatatatatatatatatgagtatcagat-tcaattctcatctcttagaactctttaccctgtctggatataagattttagtgttctggcaacaataattacatgtgacgagctataatgatacttgattgtaatgacatgatgacatatccaatttatatacag
 ||||| || || |||||||| ||||| || ||||| |||||||| ||||||||||| |||||||| || || |||||||||||||||||| ||||||||||||    || ||| | ||  | | | | | |    || | || |   |   |||  || |  | ||  |    |   ||  | ||  |  | | | | |                                                                               
ATATGGACCTCCGGGGACTGGGAAAACATTGATGGCCCGTGCCTGTGCAGCACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAGgtatgacaatttatttcta-gtttttctttttctccattatatatttgtaagcatgactaatgattccat-tgttacatgtttgtaccaactaattatacca-----------------------------------------------------------------------------

upper sequence: AT3G05530.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 5
GTATGGTCCCCCAGGGACTGGTAAAACTTTAATGGCTCGTGCCTGCGCAGCACAGACCAATGCCACCTTCCTTAAATTGGCAGGCCCTCAATTGGTCCAGgtatatatatatatatatatatatatatatatgagtatcagat-tcaattctcatctcttagaactctttaccctgtctgg-atat--aagattttagtgttctggcaacaataattacatgtgacgagctataatgatacttgattgtaatgacatgatgacatatccaatttatatacag
|||||| || ||||||||||| |||||| | ||||| ||||| ||||| || || || |||||||| || || ||  |||||||||||||| | ||||||||    |||| | |  || | | |   |   | | | | |  | | | ||     ||  |||   |  ||  | |||   | ||    || ||| |   |||                                                                                
GTATGGACCTCCAGGGACTGGGAAAACTCTGATGGCCCGTGCATGCGCGGCTCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAGgtg-ggatat-tcttcatttgttttccttcttcattcttatttgttatttgatgccttctagggattcttgacttgttcagtatcctgaaaattctgaggtt--------------------------------------------------------------------------------