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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATGGGACGGTTTATCAGATGGAGTCTGTACGAGGACTCTCCGTCAGCATTCTGACTATGTTACTTGTTTGGCAGTTGCGGCAAAAAATgtaatttctcatttgtcatgcttttttctttatagttcccactgaaaaaaattgattggtatggtggtgcaagttttgaggatatatgtgcttctcattgtcgcattctgattctatcttgatttcacaacttttag

Basic information

species Arabidopsis thaliana
transcript AT3G05090.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G05090.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv14s0030g01350.t01 (Vitis vinifera), 5'ss of exon 5
ACATGGGACGGTTTATCAGATGGAGTCTGTACGAGGACTCTCCGTCAGCATTCTGACTATGTTACTTGTTTGGCAGTTGCGGCAAAAAATgtaatttctc------atttgtcatg---cttttttctttatag-----------ttcccactgaaaa----------aaatt----gattggtatggtggtgcaagttttgaggatatatgtg----cttctcattgtcgcattctgattctatcttgatttcacaacttttag
|| ||| |  | || || ||||||   ||||| |||||||||||||| || |||||||||||||||||| | || |  || | ||||||||||||||||       | || |||||    | ||| ||  ||||           ||  || || ||           || ||    | |   | |  |||||||  ||| | ||   | |||      || || || ||   ||||||| || |  |  | |||    ||||||
ACCTGGAATTGCTTGTCTGATGGAACTTGTACCAGGACTCTCCGTCAACACTCTGACTATGTTACTTGTCTCGCTGCAGCAGAAAAAAATgtaatttctttgtcaaaattttcatggaattatttactgcatagatgaagggttcttgtcagtgtaatgctgttatttaagtttcatgttcaatttaatggtgcatatttgggggcattgtgtcatattttgtcgttatcattttctgatccttttatagtgtcatgcattttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116449111|gb|EG491703.1|EG491703
EST:     TCCGTCAGCATTCTGACTATGTTACTTGTTTGGCAGTTGCGGCAAAAA-T                         AATAATGTTGTTGCATCTGGTGGCCTTG
genomic: TCCGTCAGCATTCTGACTATGTTACTTGTTTGGCAGTTGCGGCAAAAAATgtaatttctc ... caacttttagAATAATGTTGTTGCATCTGGTGGCCTTG
EST: gi|116407303|gb|EG449895.1|EG449895
EST:     TCCGTCAGCATTCTGACTATGTTACTTGTTTGGCAGTTGCGGCAAAAAAT                         AATAATGTTGTTGCATCTGGTGGCCTTGGTGG
genomic: TCCGTCAGCATTCTGACTATGTTACTTGTTTGGCAGTTGCGGCAAAAAATgtaatttctc ... caacttttagAATAATGTTGTTGCATCTGGTGGCCTTGGTGG
EST: gi|116407307|gb|EG449899.1|EG449899
EST:     TCCGTCAGCATTCTGACTATGTTACTTGTTTGGCAGTTGCGGCAAAAAAT                         AATAATGTTGTTGCATCTGGTGGCCTTGGTGGGGAGGTTTTTATATGGGAT
genomic: TCCGTCAGCATTCTGACTATGTTACTTGTTTGGCAGTTGCGGCAAAAAATgtaatttctc ... caacttttagAATAATGTTGTTGCATCTGGTGGCCTTGGTGGGGAGGTTTTTATATGGGAT