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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTTGATTTTCGGTTTCCTGTTGGAGCTCCAATCCATGGTATTCGCGCATTTTTGGTCACAAATCAACTCAAGgtataaatcaaacttttaaattgatttatcttttaaatctttggattcatatcaatgcacttttccgccgtggaaaatcggcaacagttttctcaaatgttcatagcaaaagattagtaatttcttgctttatgtaccaatatcgagcttgctaactgcttattcttgttttgaccgaacag

Basic information

species Arabidopsis thaliana
transcript AT3G04870.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G04870.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os07g10490.1 (Oryza sativa), 5'ss of exon 5
AGCTTGATTTTCGGTTTCCTGTTGGAGCTCCAATCCATGGTATTCGCGCATTTTTGGTCACAAATCAACTCAAGgtataaatcaaacttttaaattgatttatctt--ttaaatctttggattcatatcaatgcacttttccgccgtggaaaatcggcaacagtttt-ctcaaatgttcatagcaaaagattagtaatttcttgctttatgtaccaatatcgagcttgctaactgcttattcttgttttgaccgaacag
| |||||||||||||||||||| ||||||||  | |||||||| |  |||||  |    || || ||||||||||||   || |    | |||||| || |    |   ||     |   | |    | | |    || |   || ||   ||||  ||| | |||  ||       | || |                                                                            
AACTTGATTTTCGGTTTCCTGTGGGAGCTCCGTTACATGGTATCCAAGCATTCCTACGAACTAACCAACTCAAGgta---atta---ctctaaattcatgtccggtaactaggatatcaaactt---tgactatctttattgaccatgtttaatca-caatattttgactttccaacttattgt---------------------------------------------------------------------------

upper sequence: AT3G04870.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv14s0030g01740.t01 (Vitis vinifera), 5'ss of exon 5
AGCTTGATTTTCGGTTTCCTGTTGGAGCTCCAATCCATGGTATTCGCGCATTTTTGGTCACAAATCAACTCAAGgtataaatcaaacttttaaattgatttatcttttaaatctttggattcatatcaatgcacttttccgccgtggaaaatcggcaaca-gttttctcaaatgttcatagcaaaagattagtaatttcttgctttatgtaccaatatcgagcttgctaactgcttattcttgttttgaccgaacag
||||||||||||||||||| ||||| || ||| | ||||| ||||| ||||||||||  |||||||| ||  |||||     || | |      |  |  |   || |  || | |    |||| | | |  |      | ||    | |||   | |||  |||||| |  | ||                                                                                 
AGCTTGATTTTCGGTTTCCAGTTGGTGCACCATTACATGGAATTCGTGCATTTTTGGCTACAAATCAGCTTGAGgtaatgtgcacattgcctgttgaacctgcattctggatatct----tcatgttagtctatgagagcacctcaaagaatattctacatattttcttatttatttt-------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86024807|gb|DR320560.1|DR320560
EST:     AATCCATGGTATTCGCGCATTTTTGGTCACAAATCAACTCAAG                         CCCTATGACAAACTAAGGAATTCACTGGCTCTTGCATTAAGCCCTGTTGTT
genomic: AATCCATGGTATTCGCGCATTTTTGGTCACAAATCAACTCAAGgtataaatca ... gaccgaacagCCCTATGACAAACTAAGGAATTCACTGGCTCTTGCATTAAGCCCTGTTGTT