Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATCATAAGGGACCCATTCATGCTCAACAGTGTCATTCTAGTGTTTGCAAACAAACAAGACATGgtaaaagttcataggctctagctttccttatttcatattttttcgttctcatttaccaaaattcgtctgaactctttatgaatttcag

Basic information

species Arabidopsis thaliana
transcript AT3G03120.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G03120.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA11G01380.2 (Glycine max), 5'ss of exon 6
GATATCATAAGGGACCCATTCATGCTCAACAGTGTCATTCTAGTGTTTGCAAACAAACAAGACATGgtaaaagttca-taggctctagctttccttatttcatattttttcgttctcatttaccaaaattc---gtctgaactctttatgaatttcag--------
   |||||||  |||||||| |||||||| ||||||||  | |||||||| |||||||||||| |||||   |||   ||   | |    |   || | | |  |   |    |  |||| |    |  ||   | ||| |      ||     |||         
ACAATCATAAATGACCCATTTATGCTCAATAGTGTCATCTTGGTGTTTGCCAACAAACAAGACCTGgtatgtgtttgctacttttttatatgtgttctcttaattgcatgacctgacattaaggttatctctgtgactggagatcacataggagtcaaaacatgta

upper sequence: AT3G03120.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: PP1S37_304V6.1 (Physcomitrella patens), 5'ss of exon 5
GATATCATAAGGGACCCATTCATGCTCAACAGTGTCATTCTAGTGTTTGCAAACAAACAAGACATGgtaaaagttcataggctctagctttccttatttcatattttttcgttctc-atttaccaaaattcgtctgaactct----ttatgaatttcag--------
 | |||||||  || ||| | |||   ||||| |  ||||| |||||||||||||||||||||||||||   |  |||      |||  ||  |  |  |  || |||  |   |  ||  | |     |  | |    |||    |  |  | ||||         
CAAATCATAAACGATCCACTGATGAGGAACAGCGCAATTCTTGTGTTTGCAAACAAACAAGACATGgtagt-gcccattctgagtagaattgatgctaccgaatgtttatgaaatagatgcatcggtgatgctattccatctactgtcgtcgagttcatatgcttgc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164054271|gb|ES184793.1|ES184793
EST:     TGTTTGCAAACAAACAAGACATG                         AGAGGAGCCATGTCTCCTCGAGAAGTATGTGAAGGGCTTTGCTTACTTGAT
genomic: TGTTTGCAAACAAACAAGACATGgtaaaagttc ... tgaatttcagAGAGGAGCCATGTCTCCTCGAGAAGTATGTGAAGGGCTTGGCTTACTTGAT