1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTCTTTTATTGCCAGCCCTCGTTGGCAAGATCCGTCTAGCTACGCTTCCTTAATCATGCCTCAAGGAGTTGTCCCGGTTCAAGGATGGAACCCTTACAGTgtaagttttctaaacaacattgcttatactcttcagactttatatgacttggttttgatttctgtcgagtgtttctcggggtttccatttcgttag
species | Arabidopsis thaliana |
transcript | AT3G02830.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TAATCATGCCTCAAGGAGTTGTCCCGGTTCAAGGATGGAACCCTTACAGT GGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAAAACTACEST: gi|116473654|gb|EG516246.1|EG516246
genomic: TAATCATGCCTCAAGGAGTTGTCCCGGTTCAAGGATGGAACCCTTACAGTgtaagttttc ... atttcgttagGGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAAAACTAC
EST: TAATCATGCCTCAAGGAGTTGTCCCGGTTCAAGGATGGAACCCTTACAGT GGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAAAACTACEST: gi|116473653|gb|EG516245.1|EG516245
genomic: TAATCATGCCTCAAGGAGTTGTCCCGGTTCAAGGATGGAACCCTTACAGTgtaagttttc ... atttcgttagGGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAAAACTAC
EST: TAATCATGCCTCAAGGAGTTGTCCCGGTTCAAGGATGGAACCCTTACAGT GGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAAAACTACEST: gi|116473655|gb|EG516247.1|EG516247
genomic: TAATCATGCCTCAAGGAGTTGTCCCGGTTCAAGGATGGAACCCTTACAGTgtaagttttc ... atttcgttagGGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAAAACTAC
EST: TCAAGGATGGAACCCTTACAGT GGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAAAACTACEST: gi|124916504|gb|EH990378.1|EH990378
genomic: TCAAGGATGGAACCCTTACAGTgtaagttttc ... atttcgttagGGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAAAACTAC
EST: TAATCATGCCTCAAGGAGTTGTCCCGGTTCAAGGATGGAACCCTTACAGT GGTCAGCTCGGEST: gi|86037522|gb|DR333277.1|DR333277
genomic: TAATCATGCCTCAAGGAGTTGTCCCGGTTCAAGGATGGAACCCTTACAGTgtaagttttc ... atttcgttagGGTCAGCTCGG
EST: AGTTGTCCCGGTTCAAGGATGGAACCCTTACAGT GGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAAAACTACEST: gi|116473656|gb|EG516248.1|EG516248
genomic: AGTTGTCCCGGTTCAAGGATGGAACCCTTACAGTgtaagttttc ... atttcgttagGGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAAAACTAC
EST: TAATCATGCCTCAAGGAGTTGTCCCGGTTCAAGGATGGAACCCTTACAGT GGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAAAACTAC
genomic: TAATCATGCCTCAAGGAGTTGTCCCGGTTCAAGGATGGAACCCTTACAGTgtaagttttc ... atttcgttagGGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAAAACTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTTTTATTGCCAGCCCTCGTTGGCAAGATCCGTCTAGCTACGCTTCCTTAATCATGCCTCAAGGAGTTGTCCCGGTTCAAGGATGGAACCCTTACAGTgtaagttttctaaacaacattgcttatactcttcagactttatatgacttggttttgatttctgtcgagtgtttctcggggtttccatttcgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA