1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTTTATGATAGCCTTGGAGATGTTATATGCCATGGTGATAAAAGCGTCATAAGGGAAGGTCACAAAAGCTTTCCAAGTGGACACACGTCATgtaagaccaagttactggtttataattcagaactagaaagaagcaaaagagtaaaaactgtggggttgaattgtttttgcag
species | Arabidopsis thaliana |
transcript | AT3G02600.5 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAGCGTCATAAGGGAAGGTCACAAAAGCTTTCCAAGTGGACACACGTCAT GGTCTTTTTCGGGTCTCGGATTTCTTTCGCTEST: gi|124817974|gb|EH902840.1|EH902840
genomic: AAGCGTCATAAGGGAAGGTCACAAAAGCTTTCCAAGTGGACACACGTCATgtaagaccaa ... gtttttgcagGGTCTTTTTCGGGTCTCGGATTTCTTTCGCT
EST: AAGCGTCATAAGGGTAGGTCACAAAAGCTTTCCAAGTGGACACACGTCAT GGTCTTTTTCGGGTCTCGGATTTCTTTCGCTTTACTTATCGGGAAAGATTCEST: gi|86075218|gb|DR370975.1|DR370975
genomic: AAGCGTCATAAGGGAAGGTCACAAAAGCTTTCCAAGTGGACACACGTCATgtaagaccaa ... gtttttgcagGGTCTTTTTCGGGTCTCGGATTTCTTTCGCTTTACTTATCGGGAAAGATTC
EST: AAGCGTCATAAGGGAAGGTCACAAAAGCTTTCCAAGTGGACACACGTCAT GGTCTTTTTCGGGTCTCGGATTTCTTTCGCTTTACTTATCGGGAAAGATTC
genomic: AAGCGTCATAAGGGAAGGTCACAAAAGCTTTCCAAGTGGACACACGTCATgtaagaccaa ... gtttttgcagGGTCTTTTTCGGGTCTCGGATTTCTTTCGCTTTACTTATCGGGAAAGATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTATGATAGCCTTGGAGATGTTATATGCCATGGTGATAAAAGCGTCATAAGGGAAGGTCACAAAAGCTTTCCAAGTGGACACACGTCATgtaagaccaagttactggtttataattcagaactagaaagaagcaaaagagtaaaaactgtggggttgaattgtttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA