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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACAAAGCTTGGGGTTCTCTCTTGGGACTACAGCTAGCAGAAAGGGACATAATTGTGGCATGTCTAGATTACAGgtaagcaaagtagtcaatttcttaccagtgttacttgtcctggattctatcaaatctatatcagcttggagctatttgggaatttatctttgttaatcatatgcctgtatccaatgcattgaccaagcaatcccctgtctttggttcag

Basic information

species Arabidopsis thaliana
transcript AT3G02410.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116389289|gb|EG431881.1|EG431881
EST:     GGACTACAGCTAGCAGAAAGGGACATAATTGTGGCATGTCTAGATTACAG                         AAACTTTCCTCAGGGGACAATTAGTGATATGGTAAGTGATGCAGCTCAAGG
genomic: GGACTACAGCTAGCAGAAAGGGACATAATTGTGGCATGTCTAGATTACAGgtaagcaaag ... tttggttcagAAACTTTCCTCAGGGGACAATTAGTGATATGGTAAGTGATGCAGCTCAAGG
EST: gi|116389287|gb|EG431879.1|EG431879
EST:     GGACTACAGCTAGCAGAAAGGGACATAATTGTGGCATGTCTAGATTACAG                         AAACTTTCCTCAGGGGACAATTAGTGATATGGTAAGTGATGCAGCTCAAGG
genomic: GGACTACAGCTAGCAGAAAGGGACATAATTGTGGCATGTCTAGATTACAGgtaagcaaag ... tttggttcagAAACTTTCCTCAGGGGACAATTAGTGATATGGTAAGTGATGCAGCTCAAGG
EST: gi|116389292|gb|EG431884.1|EG431884
EST:     GGACTACAGCTAGCAGAAAGGGACATAATTGTGGCATGTCTAGATTACAG                         AAACTTTCCTCAGGGGACAATTAGTGATATGGTAAGTGATGCGGCTCAAGG
genomic: GGACTACAGCTAGCAGAAAGGGACATAATTGTGGCATGTCTAGATTACAGgtaagcaaag ... tttggttcagAAACTTTCCTCAGGGGACAATTAGTGATATGGTAAGTGATGCAGCTCAAGG
EST: gi|116389288|gb|EG431880.1|EG431880
EST:     GGACTACAGCTAGCAGAAAGGGACATAATTGTGGCATGTCTAGATTACAG                         AAACTTTCCTCAGGGGACAATTAGTGATATGGTAAGTGATGCAGCTCAAGG
genomic: GGACTACAGCTAGCAGAAAGGGACATAATTGTGGCATGTCTAGATTACAGgtaagcaaag ... tttggttcagAAACTTTCCTCAGGGGACAATTAGTGATATGGTAAGTGATGCAGCTCAAGG
EST: gi|116389291|gb|EG431883.1|EG431883
EST:     GGACTACAGCTAGCAGAAAGGGACATAATTGTGGCATGTCTAGATTACAG                         AAACTTTCCTCAGGGGACAATTAGTGATATGGTAAGTGATGCGGCTCAAGG
genomic: GGACTACAGCTAGCAGAAAGGGACATAATTGTGGCATGTCTAGATTACAGgtaagcaaag ... tttggttcagAAACTTTCCTCAGGGGACAATTAGTGATATGGTAAGTGATGCAGCTCAAGG
EST: gi|116389290|gb|EG431882.1|EG431882
EST:     GGACTACAGCTAGCAGAAAGGGACATAATTGTGGCATGTCTAGATTACAG                         AAACTTTCCTCAGGGGACAATTAGTGATATGGTAAGTGATGCAGCTCAAGG
genomic: GGACTACAGCTAGCAGAAAGGGACATAATTGTGGCATGTCTAGATTACAGgtaagcaaag ... tttggttcagAAACTTTCCTCAGGGGACAATTAGTGATATGGTAAGTGATGCAGCTCAAGG
EST: gi|116389281|gb|EG431873.1|EG431873
EST:     GGACTACAGCTAGCAGAAAGGGACATAATTGTGGCATGTCTAGATTACAG                         AAACTTTCCTCAGGGGACAATTAGTGATATGGTAAGTGATGCAGCTCAAGG
genomic: GGACTACAGCTAGCAGAAAGGGACATAATTGTGGCATGTCTAGATTACAGgtaagcaaag ... tttggttcagAAACTTTCCTCAGGGGACAATTAGTGATATGGTAAGTGATGCAGCTCAAGG
EST: gi|116389278|gb|EG431870.1|EG431870
EST:     GGACTACAGCTAGCAGAAAGGGACATAATTGTGGCATGTCTAGATTACAG                         AAACTTTCCTCAGGGGACAATTAGTGATATGGTAAGTGATGCAGCTCAAGG
genomic: GGACTACAGCTAGCAGAAAGGGACATAATTGTGGCATGTCTAGATTACAGgtaagcaaag ... tttggttcagAAACTTTCCTCAGGGGACAATTAGTGATATGGTAAGTGATGCAGCTCAAGG
EST: gi|116389280|gb|EG431872.1|EG431872
EST:     GGACTACAGCTAGCAGAAAGGGACATAATTGTGGCATGTCTAGATTACAG                         AAACTTTCCTCAGGGGACAATTAGTGATATGGTAAGTGATGCAGCTCAAGG
genomic: GGACTACAGCTAGCAGAAAGGGACATAATTGTGGCATGTCTAGATTACAGgtaagcaaag ... tttggttcagAAACTTTCCTCAGGGGACAATTAGTGATATGGTAAGTGATGCAGCTCAAGG
EST: gi|116389279|gb|EG431871.1|EG431871
EST:     GGACTACAGCTAGCAGAAAGGGACATAATTGTGGCATGTCTAGATTACAG                         AAACTTTCCTCAGGGGACAATTAGTGATATGGTAAGTGATGCAGCTCAAGG
genomic: GGACTACAGCTAGCAGAAAGGGACATAATTGTGGCATGTCTAGATTACAGgtaagcaaag ... tttggttcagAAACTTTCCTCAGGGGACAATTAGTGATATGGTAAGTGATGCAGCTCAAGG