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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGGCTTGCCAAAGATGCTCCTGATGAAGGCAAAACTCATGTGTCTACTCGAGTCATGGGCACTTATGGTTACGCTGCCCCCGAGTATGTAATGACCGgtaagttttgttttttgtctttgcatttcattcactcctctacttatatcttctctgtatggttgaatatagaaaattagaaacctacacatatggttgatgcaaagtattactatgatgaaacatacatctaatttctttggtttgagattatatataactactgtcctcttattactccttag

Basic information

species Arabidopsis thaliana
transcript AT3G01300.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G01300.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os09g19700.1 (Oryza sativa), 5'ss of exon 5
TTTGGGCTTGCCAAAGATGCTCCTGATGAAGGCAAAACTCATGTGTCTACTCGAGTCATGGGCACTTATGGTTACGCTGCCCCCGAGTATGTAATGACCGgtaagttttgttttttgtctttgcatttcattcactcctctacttatatcttctctg-tatggttgaatatagaaaat-tagaaacctacacatatggttgatgcaaagtattactatgatgaaacatacatctaatttctttggtttgagattatatataactactgtcctcttattactccttag
|||||||||||||||||||  ||||  |  | ||||||||| |||||||||||||| ||||| || |||||||| || || || |||||||| ||||| |||||||  | |  |  ||| |  |      || ||    |  |   || |  |   | || |||  |||||| | |    || ||||| |  | ||   | |   ||                                                                                
TTTGGGCTTGCCAAAGATGGCCCTGTAGGTGACAAAACTCACGTGTCTACTCGAGTAATGGGAACATATGGTTATGCAGCTCCGGAGTATGTTATGACAGgtaagtgct-tcatcagtcatcac-cagggttgacgttaccgccggtaaccgcgggggtacggt--aatataaataccgcagtaacctccttaaat---tcaaataa--------------------------------------------------------------------------------

upper sequence: AT3G01300.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os01g40590.1 (Oryza sativa), 5'ss of exon 5
TTTGGGCTTGCCAAAGATGCTCCTGATGAAGGCAAAACTCATGTGTCTACTCGAGTCATGGGCACTTATGGTTACGCTGCCCCCGAGTATGTAATGACCGgtaagtt--ttgtt-ttttgtctttgcatttcattcactcctctacttatatcttctctgtatggttgaatatagaaaattagaaacctacacatatggttgatgcaaagtattactatgatgaaacatacatctaatttctttggtttgagattatatataactactgtcctcttattactccttag
||||| || || |||||||  ||||| |  |  ||||| ||||| ||||||||||||||||| |||||||| || || || || |||||||| ||||| ||| ||||  |  ||  |||||   |    ||  || | |  | |    ||||    ||  |   | ||||  |  |    |  |||| | ||||| | ||  |                                                                                     
TTTGGACTAGCTAAAGATGGCCCTGAGGGTGATAAAACACATGTATCTACTCGAGTCATGGGAACTTATGGATATGCAGCTCCGGAGTATGTCATGACAGgtgagttgatcattactttgttagttggcttgcttgagtaattttgaaatattgcatc-atgctgctgaacctcta----tccaaacttgcacatgtagtaaaat-----------------------------------------------------------------------------------

upper sequence: AT3G01300.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G132184_T03 (Zea mays), 5'ss of exon 5
TTTGGGCTTGCCAAAGATGCTCCTGATGAAGGCAAAACTCATGTGTCTACTCGAGTCATGGGCACTTATGGTTACGCTGCCCCCGAGTATGTAATGACCGgtaagttttgttttttgtctttgcatttcattcactcctctacttatatcttctctgtatggttgaatatagaaaattagaaacctacacatatggttgatgcaaagtattactatgatgaaacatacatctaatttctttggtttgagattatatataactactgtcctcttattactccttag
||||||||||| ||||| |  ||||  |  |  ||||||||||| ||||||||||| ||||| || ||||| || || || || || ||||| ||||| ||||||| |   || |  | |||||  |   |     | || |  | |   |  |  | | |  ||   |  |  | |   |    |   || | |    || ||                                                                                 
TTTGGGCTTGCGAAAGACGGACCTGTAGGTGATAAAACTCATGTTTCTACTCGAGTAATGGGAACCTATGGATATGCAGCACCAGAATATGTCATGACTGgtaagtatc--ttgtcatatttgccatgactgtgtccatcgaactctgg-tggtgagcaagtctggccactgccagtgctaccagtgagca-acgaaccattca---------------------------------------------------------------------------------

upper sequence: AT3G01300.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA19G02360.1 (Glycine max), 5'ss of exon 4
TTTGGGCTTGCCAAAGATGCTCCTGATGAAGGCAAAACTCATGTGTCTACTCGAGTCATGGGCACTTATGGTTACGCTGCCCCCGAGTATGTAATGACCGgtaagttttgttttttgtctttgcatttcattcactcctctacttatatcttctctgtatggttgaatatagaaaattagaaacctacaca--tatggttgatgcaaagtattactatgatgaaacatacatctaatttctttggtttgagattatatataactactgtcctcttattactccttag
||||| ||||||||||||| |||||| |  |  || || ||||| |||||  |||| ||||| || |||||||| ||||| || |||||||| ||||| ||| |||||||    ||          || |||| ||  || |||| ||   | ||| ||   || |   || | || ||  |  ||| | |  ||  |||  |  ||| |   |                                                                         
TTTGGACTTGCCAAAGATGGTCCTGAGGGGGAGAAGACACATGTATCTACAAGAGTTATGGGAACATATGGTTATGCTGCTCCTGAGTATGTGATGACTGgtgagttttgagcctt---------ctttattc-cttttcaacttttaatgtttct-taaacttaa---tatataactaagactctagatagctaaagttatttaaaatttgca-------------------------------------------------------------------------

upper sequence: AT3G01300.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: PP1S31_254V6.1 (Physcomitrella patens), 5'ss of exon 5
TTTGGGCTTGCCAAAGATGCTCCTGATGAAGGCAAAACTCATGTGTCTACTCGAGTCATGGGCACTTATGGTTACGCTGCCCCCGAGTATGTAATGACCGgtaagttttgttttttgtctttgcatttcattcactcctctacttatatcttctctgtatggttgaatatagaaaattagaaacctacacatatggttgatgcaaagtattactatgatgaaacatacatctaatttctttggtttgagattatatataactactgtcctcttattactccttag
||||| || || |||||||  ||||| | || ||||||||| || || || || ||||||||||| ||||| || |||||||| |||||||| ||||| |||  | ||          |||  |  |||||||    || | |  | || |  || |   | ||        |      ||||| ||  | | |   ||  || |  |  |  | || |      | |||    || |||   ||| |   | |||  |  | | |                   
TTTGGCCTAGCGAAAGATGGGCCTGAAGGAGACAAAACTCACGTATCAACACGTGTCATGGGCACCTATGGCTATGCTGCCCCTGAGTATGTGATGACAGgtgtgatt----------cttccctattcattcgtgtcttttcgaaaatgtattcag-gcgctttgccgagtactcgcggaaacttat-cttgtatatgcagcgatctgattttgtg-taggttcttcattcggttgcttca-tttaactatgtattgatttgcag-------------------