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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCATTTGCTTGAGCATCAGTATCACCTCACGAAGTATAATGTACATTCAAAAGTTCCTCTGGTCCCAATGCAGAACGGTATTCATCCTATGGCATCTGgtaagtctgactccttatatcacttgttggtgtagatggttcaatgatttgtttgtggtttcactattattataacactaaatgtttgcagcgcag

Basic information

species Arabidopsis thaliana
transcript AT2G46420.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G46420.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA19G44420.1 (Glycine max), 5'ss of exon 5
---AATCATTTGCTTGAGCATCAGTATCACCTCACGAAGTATAATGTACATTCAAAAGTTCCTCTGGTCCCAATGCAGAACGGTATTCATCCTATGGCATCTGgtaagt-ctgactccttatatcacttgttggtgtagatggttcaatgatttgtttgtggtttcactattattataa---cactaaatgtttgcagcgcag-
   ||||||||||||||||||||||||||  | | |||||||    | | | ||||  |||| ||||  || || ||||| ||  | ||||| |||    ||||||| | ||  |  | |||   | |   |  |  |  |  | |||| ||||  |     | | ||||||||| | |   ||||      || |    ||  
TTCAATCATTTGCTTGAGCATCAGTATCATATGATGAAGTATCCCTTGCCTACAAAGATTCCACTGGCTCCCATACAGAATGGAGTCCATCCAATG---CCTGgtaaattcttgcctcatattgtattctcttct-catgttatgcaataattttctgagtttctgactattattcttagtacactgccaaattcctagtcaac

upper sequence: AT2G46420.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA07G06230.1 (Glycine max), 5'ss of exon 6
--AATCATTTGCTTGAGCATCAGTATCACCTCACGAAGTATAATGTACATTCAAAAGTTCCTCTGGTCCCAATGCAGAACGGTATTCATCCTATGGCATCTGgtaagtctgactccttatatcact-----tgttggtgtagatggttcaat----gatttgtttgtggtttcactattattataacactaaatgtttgcagcgcag
  |||||||| ||||||||||||||||| |||| ||||| |    | | | |||| |||||  |||  ||||| ||||| || || ||||| |  ||  ||||||| |      |||   |||| |     | |  ||||   || || |||     || | ||   |  ||  | |||   || ||  | || ||   |   |   
TCAATCATTTACTTGAGCATCAGTATCATCTCATGAAGTGTCCAATGCCTGcaaaggttccattggctccaatacagaatggaatccatcccaatgc--ctggtaaattcttgccctctcatcagtcagcatatgagtgtgtgtgtttgaatccgaaatatattcacgtctttgcaatttgcatgac--ttaaagtaaactatg---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116445046|gb|EG487638.1|EG487638
EST:     AAAAGTTCCTCTGGTCCCAATGCAGAACGGTATTCATCCTATGGCATCTG                         TGAACAACATGCCCATGGGATACCCAGTACTACAACATCCTCAGATGCATG
genomic: AAAAGTTCCTCTGGTCCCAATGCAGAACGGTATTCATCCTATGGCATCTGgtaagtctga ... tgcagcgcagTGAACAACATGCCCATGGGATACCCAGTACTACAACATCCTCAGATGCATG