1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTTGGGGAGACGATGGCTTATCCAAACCGAAAACAACCAGATGACAGTAAAACGCTTTCCGAACTTCCGTTTGAGgtaagttttttacatgcatagaagatcatcttgtatgatgattatatagtctataacattaatttttcatattctgttacccaagtagctataactgaagttgatcaatctatctgcag
species | Arabidopsis thaliana |
transcript | AT2G45640.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAACAACCAGATGACAGTAAAACGCTTTCCGAACTTCCGTTTGAG ATTGGAGATTATCTGGATGTGGCAATTTACTAGGAGGTTTCTGTTTCTTGTEST: gi|152038382|gb|AV821346.2|AV821346
genomic: AAACAACCAGATGACAGTAAAACGCTTTCCGAACTTCCGTTTGAGgtaagttttt ... ctatctgcagATTGGAGATTATCTGGATGTGGCAATTTACTAGGAGGTTTCTGTTTCTTGT
EST: ACCGAAAACAACCAGATGACAGTAAAACGCTTTCCGAACTTCCGTTTGAG ATTGGAGATTATCTGGATGTGGCAATTTACTAGGAGGTTTCTGTTTCTTGTEST: gi|164179501|gb|ES086643.1|ES086643
genomic: ACCGAAAACAACCAGATGACAGTAAAACGCTTTCCGAACTTCCGTTTGAGgtaagttttt ... ctatctgcagATTGGAGATTATCTGGATGTGGCAATTTACTAGGAGGTTTCTGTTTCTTGT
EST: CGAAAACAACCAGATGACAGTAAAACGCTTTCCGAACTTCCGTTTGAAGEST: gi|86075848|gb|DR371605.1|DR371605
genomic: CGAAAACAACCAGATGACAGTAAAACGCTTTCCGAACTTCCGTTTGA-G
EST: ACCGAAAACAACCAGATGACAGTAAAACGCTTTCCGAACTTCCGTTTGAG ATTGGAGATTATCTGGATGTGGCAATTTACTAGGAGGTTTCTGTTTCTTGTEST: gi|152033713|gb|BP562681.3|BP562681
genomic: ACCGAAAACAACCAGATGACAGTAAAACGCTTTCCGAACTTCCGTTTGAGgtaagttttt ... ctatctgcagATTGGAGATTATCTGGATGTGGCAATTTACTAGGAGGTTTCTGTTTCTTGT
EST: ACCGAAAACAACCAGATGACAGTAAAACGCTTTCCGAACTTCCGTTTGAG ATTGGAGATTATCTGGATGTGGCAATTTACTAGGAGGTTTCTGTTTCTTGT
genomic: ACCGAAAACAACCAGATGACAGTAAAACGCTTTCCGAACTTCCGTTTGAGgtaagttttt ... ctatctgcagATTGGAGATTATCTGGATGTGGCAATTTACTAGGAGGTTTCTGTTTCTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGGGAGACGATGGCTTATCCAAACCGAAAACAACCAGATGACAGTAAAACGCTTTCCGAACTTCCGTTTGAGgtaagttttttacatgcatagaagatcatcttgtatgatgattatatagtctataacattaatttttcatattctgttacccaagtagctataactgaagttgatcaatctatctgcag
- - - - - - - - - - - - - - - - - - CAGATG