Sequence
atgc intronic sequence ATGC exonic sequenceAATAGCTGGAGCTTCAGTGTTATTTCTACCATGTGCTCTATACAACTGGACACCTCCTGAAGGTGCTGGTCAGTTTCATGGCATGCCATTAGATGTCAAGgtactctaaatccctaaaaccataaaccctcaaagcatcatcagagtctcattactcgtttttttgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G45320.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G45320.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os06g37430.1 (Oryza sativa), 5'ss of exon 5
AATAGCTGGAGCTTCAGTGTTATTTCTACCATGTGCTCTATACAACTGGACACCTCCTGAAGGTGCTGGTCAGTTTCATGGCATGCCATTAGATGTCAAGgtactctaaatc-ccta-aaaccataaa----ccctcaaagcatcatcagagtctcattactcgtttttttgcag-------------------------
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AGTGAATGGAACATCTATTCTCTTTTTGCCTTGTGCAGTTTATAATTGGACACCACCTGAAGGTGCTGGACAGTTCCATGGTATGCCATTGGATGTAAAGgtacaccatttttcctacagatgagggagattttttttatgtattaacactaaaagaaaatggttttcttagcaaattcttttgtacagctattaaaata
upper sequence: AT2G45320.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA06G42210.1 (Glycine max), 5'ss of exon 4
AATAGCTGGAGCTTCAGTGTTATTTCTACCATGTGCTCTATACAACTGGACACCTCCTGAAGGTGCTGGTCAGTTTCATGGCATGCCATTAGATGTCAAGgtactctaaatcccta-----aaaccataaaccctcaaagcatcatcagagtctcattactcgtttttttgcag--------------------------
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TATTGGGGGTACCTCAGTAGTGTTCTTACCTTGTTCTTTGTACAATTGGACTCCACCTGAGGGTGCTGGTCAATTTCATGGCATGCCATTGGATGCTAAGgtatagtgcagacttattacagaagtatttctgtctgatccttcgctggatgctttaagttagaattttggaaattttctgaatataatgttcctttagc
upper sequence: AT2G45320.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA16G24280.1 (Glycine max), 5'ss of exon 3
AATAGCTGGAGCTTCAGTGTTATTTCTACCATGTGCTCTATACAACTGGACACCTCCTGAAGGTGCTGGTCAGTTTCATGGCATGCCATTAGATGTCAAGgtac--tctaaatccctaaaaccata-aaccctcaaagcatcatcagagtctcattactcgtttttttgcag----------------------------------------------------------------------------------
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TATTGGGGGTAGTTCAGTATTGTTCTTACCTTGTTCTCTGTACAATTGGACTCTACCTGAGGGTGCTTGTCTATTTCATGGCATGCCATTGGATGTTAAGgtataatgtaaaacaatatttctgtctgatactcatctggtgttttaagttagaattttggaaactttataaatatatttcgcctttatcttcaacctaatattttaaacttgtagcaacattatttttttgatcctcagctaaatgcttgaag
upper sequence: AT2G45320.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv15s0048g00310.t01 (Vitis vinifera), 5'ss of exon 6
AATAGCTGGAGCTTCAGTGTTATTTCTACCATGTGCTCTATACAACTGGACACCTCCTGAAGGTGCTGGTCAGTTTCATGGCATGCCATTAGATGTCAAGgtactctaaatccctaaaaccataaaccctca--aagcatcatcagagtctca--ttactcgtttttttgcag--------------------------------------------------------------------------------------------
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TATTGGTGGTACTTCAGTGCTCTTTCTACCTTGTGCTATTTACAATTGGACACCACCAGAGGGTGCTGGACAATTTCATGGCATGCCCCTTGATGTGAAGgtaca-taatttcttcaaatcattttttcacattgatcttggtcaatagctgagcttgaacatcatctttgggtatcccttgggtttgatccctttttaacatatatggcaagtttttatgagcatcattttttatttacgtctggctttgtttcctgtgcacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164004728|gb|EL971840.1|EL971840EST: CAGTTTCATGGCATGCCATTAGATGTCAAG ATTGTTCACTT
genomic: CAGTTTCATGGCATGCCATTAGATGTCAAGgtactctaaa ... ttttttgcagATTGTTCACTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATAGCTGGAGCTTCAGTGTTATTTCTACCATGTGCTCTATACAACTGGACACCTCCTGAAGGTGCTGGTCAGTTTCATGGCATGCCATTAGATGTCAAGgtactctaaatccctaaaaccataaaccctcaaagcatcatcagagtctcattactcgtttttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG