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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCTATTCGTAGAGCTACCATAGCACAAAAGTTTGTTCCTGTATTTATGGGTAGTGCATTCAAAAACAAGgtaattgatttttggaatccaaagatgatatatgcgcaagtttggatgatatattcacttacgtttctccttgccctcttgtgtctgtattaaaaagttttcatcatctgccgtgctcccttttttttttaatctgcag

Basic information

species Arabidopsis thaliana
transcript AT2G45030.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G45030.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA11G16460.1 (Glycine max), 5'ss of exon 5
GAAGCTATTCGTAGAGCTACCATAGCACAAAAGTTTGTTCCTGTATTTATGGGTAGTGCATTCAAAAACAAGgtaattgatttttggaatccaaagatgatatatgcgcaagtttggatgatatattcacttacgtttctccttgccctcttgtgtctgtattaaaaagttttcatcatctgccgtgctcccttttttttttaatctgcag
|||||  ||||||| ||||||||||| || || ||| | || ||||| ||||||||||| |||||||| ||||| |    |   |    | |||   |  ||||| |     ||||  || || | | ||  |        ||| |  | |||| | | |  |  | || | |  |                                   
GAAGCAGTTCGTAGGGCTACCATAGCCCAGAAATTTATACCAGTATTCATGGGTAGTGCTTTCAAAAATAAGgtgaccagtgaattactttcaat--ttgtatat-cttttttttgtgtg-tacaatgacggatacaatcactttcagt-ttgtatat-tgctgcatagctctacttt---------------------------------

upper sequence: AT2G45030.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: PP1S20_94V6.1 (Physcomitrella patens), 5'ss of exon 5
GAAGCTATTCGTAGAGCTACCATAGCACAAAAGTTTGTTCCTGTATTTATGGGTAGTGCATTCAAAAACAAGgtaattgatttttggaatccaaagatgatatatg-cgcaagtttggatgatatattcacttacgtttctccttgccctc-ttgtgtctgtattaaaaagttttcatcatctgccgtgctcccttttttttttaatctgcag
|  ||  |  | ||||| ||  |    |   | ||  | ||||| ||||||||||||||||| ||||||||||||||   || ||| |     |  ||||  || |  |||   ||  |   | | || |  |  ||   |  | ||   | |||| ||     | |     ||| || || |                              
GGTGCGGTGAGAAGAGCGACTCTGAACCTGCAATTCATACCTGTGTTTATGGGTAGTGCATTTAAAAACAAGgtaatc--ttcttgtatgtatattatgacttaggatgca---ttaaactttgtcttaa--tgtgtgaatagtggctaacattgtttcaccgctga-----tttgatgattta-----------------------------