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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCGTCTGAAGAAACTGAAGTCAGAACATGGGAAGGTCCAACTGGGAAACATCACTGTTGATATGgtagaaacaatcatgattttcacgtttttggtttgtttatatgattttcaccttccattgcataactcatcataatcccctttgaaataaag

Basic information

species Arabidopsis thaliana
transcript AT2G44350.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G44350.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os11g33240.3 (Oryza sativa), 5'ss of exon 4
GACCGTCTGAAGAAACTGAAGTCAGAACATGGGAAGGTCCAACTGGGAAACATCACTGTTGATATGgta-gaaacaatcat-gattttcacgtttttggtttgtttatatgattttcaccttccattgcataactcatcataatcccctttgaaataaag---------
|| ||  | |||||||| || |||||||||||||||||||| || |||||||| ||||||||||||||| ||  |    || |||| |       |   | | ||  |||   |||         |  | ||| | ||     |    | |  |||   |         
GATCGCTTAAAGAAACTTAAATCAGAACATGGGAAGGTCCAGCTTGGAAACATAACTGTTGATATGgtatgattctgctatcgattatttatggataaatctattgctattgctttttaagggtgtc-cttaattgattgggctaaagtcttgaattgtgtttctccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124981386|gb|EL054258.1|EL054258
EST:     GAAGTCAGAACTATGGGAAGGTCCAACTGGGAAACATCACTGTTGATATG                         GTTATTGGTGGAATGAGAGGGATGACTG
genomic: GAAGTCAGAAC-ATGGGAAGGTCCAACTGGGAAACATCACTGTTGATATGgtagaaacaa ... tgaaataaagGTTATTGGTGGAATGAGAGGGATGACTG
EST: gi|164102586|gb|ES032213.1|ES032213
EST:     TGAAGTCAGAACATGGGAAGGTCCAACTGGGAAACATCACTGTTGATATG                         GTTATTGGTGGAA
genomic: TGAAGTCAGAACATGGGAAGGTCCAACTGGGAAACATCACTGTTGATATGgtagaaacaa ... tgaaataaagGTTATTGGTGGAA
EST: gi|47832067|gb|CK121751.1|CK121751
EST:     TGAAGTCAGAACATGGGAAGGTCCAACTGGGAAACATCACTGTTGATATG                         GTTATTGGTGGAATGAGAGGGATGACTGGATTGCTTTGGGAAACCTCATTG
genomic: TGAAGTCAGAACATGGGAAGGTCCAACTGGGAAACATCACTGTTGATATGgtagaaacaa ... tgaaataaagGTTATTGGTGGAATGAGAGGGATGACTGGATTGCTTTGGGAAACCTCATTG