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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACGTGCTGTATATATAAACATTCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTGGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACAGgtacgacagaaaaaccaatcaaacaccatctttcttctagcgtttggtcaaatatagtaaccatttcttttggtttcttttccag

Basic information

species Arabidopsis thaliana
transcript AT2G41560.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G41560.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os05g41580.1 (Oryza sativa), 5'ss of exon 5
GGACGTGCTGTATATATAAACATTCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTGGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACAGgtac-gacaga---aaaaccaatcaaacaccatctttcttctagcgtttggtcaaatatagtaaccatt-tcttttggtttcttttccag----------
|| ||||| || ||  ||||||| ||||||||||| ||||||||||| || |||||| | || ||||||||  | || |||||||| || ||||||| |||||    || |      |||| || || |  ||   |||  |   |  || |  ||   | |    ||| | || | |  |   |||             
GGCCGTGCAGTTTACTTAAACATCCAGAAGTTTGTGCAGTTCCAGCTTACAGTTAATATTGTGGCTCTGATTGTGAATTTTGTCTCAGCGTGCATCATAGgtattagcacacttgctaccactctaatattattgatctaatgatgactgtttgaaatgaatgtgtattgttttctagaataaattcgtatgcattttat

upper sequence: AT2G41560.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G305159_T02 (Zea mays), 5'ss of exon 6
GGACGTGCTGTATATATAAACATTCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTGGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACAGgtacgacagaaaaacca--------atcaaacaccatctttcttctagcgttt-----ggtcaaatatagtaaccatttcttttggtttcttttccag
|| ||||| || ||  | ||||||||||||||||| ||||||||||| || |||||| | || ||||||||  | || ||  |||| || || |||| ||||  |  |    || ||        || ||        ||||| |  |  |||     ||    ||  |   |  ||    ||||   |    |  ||
GGTCGTGCGGTTTACTTGAACATTCAGAAGTTTGTGCAGTTCCAGCTTACAGTTAATATAGTGGCTCTGATAGTGAATTTCATCTCAGCGTGTATCATAGgtgtgcaaatctaatcatgaccgctatgaagtcttcgttttctgcatgttttttttgtggatggattcatacattatccactttgaactaacatgtag

upper sequence: AT2G41560.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G104730_T02 (Zea mays), 5'ss of exon 6
GGACGTGCTGTATATATAAACATTCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTGGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACAGgtacgacagaaaaaccaatcaaacaccatctttcttctagcgtt-tggtcaaatatagtaaccatttcttt--tggtttcttttccag---------------------------------------------------------------
|| || || || || |||||||| |||||||| || ||||| ||||| || || ||  | || |||||| |||||||||||||||| || ||||| ||||||  |   |    |   | | |  || ||   ||||  |   |  ||| ||       |  |  ||   ||  |||||  |  |  |                                                                
GGCCGCGCGGTCTACATAAACATCCAGAAGTTCGTGCAGTTTCAGCTGACCGTCAACATTGTGGCTCTGGTCATCAACTTTGTCTCGGCATGCATTACAGgtttg---gggccatttacctatgac-attcctcttgcaatataatggccatgggccatggctgttcagttagtggttcttggtatatctgctgctatgccatctggagtaacagtgctttgagtgctgtactactgtactgctacgacag

upper sequence: AT2G41560.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G357620_T01 (Zea mays), 5'ss of exon 5
GGACGTGCTGTATATATAAACATTCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTGGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACAGgtacg-acagaaaaaccaatcaaacaccatctttcttctagcgtttggtcaaatatagtaaccatttcttttggt-ttcttttccag-------------
|| ||||| || || |||||||| || ||||| || ||||||||||| ||||| ||  | |||||| || |||||||||| ||||| || ||||| |||||| ||  ||  |  | |  |   |     || ||  || |  |   |       || ||     |  |         | || | ||              
GGTCGTGCGGTTTACATAAACATCCAAAAGTTCGTGCAGTTCCAGCTGACTGTCAACATTGTTGCTTTGGTCATCAACTTCGTCTCAGCATGCATTACAGgtgcgcgcatcatcatctgtagtagtgtttcctttctccaatgccagtattgccatggtcgttttacccaaaaacactgttctgcactgtagattgcatt

upper sequence: AT2G41560.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G028812_T01 (Zea mays), 5'ss of exon 5
GGACGTGCTGTATATATAAACATTCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTGGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACAGgtacg-acagaaaaaccaatcaaacaccatctt-tcttctagcgtttgg---tcaa-atatagtaaccatttcttttggtttcttttccag---------
|| ||  | ||||| || ||||| |||||||| || ||||||||||| || || || || ||||| |||||  ||||||| |||||||| | | ||||||||  | ||  |   | ||||    ||   |||| ||   ||||  |  |   |||  || | |     |     |   |  |  |               
GGCCGGTCCGTATACATCAACATCCAGAAGTTCGTGCAGTTCCAGCTCACGGTGAACGTCGTTGCCCTGATGGTCAACTTCGTCTCTGCATCCTTCACAGgtgtgcacgcatgcaacaattcctcattttcttgtcagatagctatcaggactcaggatgtgggggtgacacagtcacgactgatgaatgaatggttcag

upper sequence: AT2G41560.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA10G15800.1 (Glycine max), 5'ss of exon 5
GGACGTGCTGTATATATAAACATTCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTGGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACAGgtacga-----cagaaaaaccaatcaaacaccatctttcttctagcgtttggtcaaatatagtaaccatttcttttggtttctt--ttccag
||||| ||  |||| ||||||||||| || ||||| ||||| ||| |||| || ||| | ||||||||||| || |||||||| ||||| ||||||||||||  |      || |||||         |||   |  | || | |  | || |  |||  |    | |||   |||  || |||  || |||
GGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgattcataaaaattttgtttccactg-cagtgttgttgaatctgtttcaatgaacagccgattaagttttcttccttattttcag

upper sequence: AT2G41560.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G32780.1 (Glycine max), 5'ss of exon 5
GGACGTGCTGTATATATAAACATTCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTGGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACAGgtacgacaga--aaaaccaatcaaacaccatctt--tcttctagcgtttggtcaaatatagtaaccatttcttttggtttctt--ttccag
||||| ||  |||| ||||||||||| || ||||| ||||| ||| |||| || ||| | ||||||||||| || |||||||| ||||| ||||||||||||  |       | || || |      |||      | || | |  | || |  |||  |  | | ||||| |||  || |||  || |||
GGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgattcataaacattttgtttccactgcagtgttgtcgaatctgtttcaatgaacaaccgatttcattttcttccttattttcag

upper sequence: AT2G41560.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA03G29010.1 (Glycine max), 5'ss of exon 6
GGACGTGCTGTATATATAAACATTCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTGGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACAGgtacgacagaaaaaccaatcaaacaccatctttcttctagcgtttggtcaaatatagtaaccatttcttttggtttcttttccag---
|||||||| ||||||||||||||||| || ||||| ||||| ||  | || |||||||| ||||||||| | ||||||||  | ||||| |||||||| |||  |   |  ||   |||       |   ||| || |   |||   |    |  |   | |||   |  | || |   |||      
GGACGTGCAGTATATATAAACATTCAAAAATTTGTGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAACTTCATTTCTGCATGCATCACTGgtttgttggttaatagaatttgttttcccttttattttc-tgttgaatttgtttcaagcaacatgggtgatagtcttccttctttcag

upper sequence: AT2G41560.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA19G31770.1 (Glycine max), 5'ss of exon 3
GGACGTGCTGTATATATAAACATTCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTGGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACAGgtacgacagaaaaaccaatcaaacaccatctttcttctagcgtttggtcaaatatagtaaccatttcttttggtttcttttccag---
|||||||| ||||| ||||||||||| || ||||| ||||| ||  | || |||||||| ||||||||| | ||||||||  | ||||| |||||||| |||  |   |  ||   |||       |   ||| |  |   |||   |    |  |   | |||   |  | || |   |||      
GGACGTGCAGTATACATAAACATTCAAAAATTTGTGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAACTTCTTTTCTGCGTGCATCACTGgtttgttggttaatagaatttgttttcccttttataatc-tgttgactttgtttcaagcaacatggttgatagtcttccttctttcag

upper sequence: AT2G41560.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv13s0158g00360.t01 (Vitis vinifera), 5'ss of exon 5
GGACGTGCTGTATATATAAACATTCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTGGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACAGgtacgacagaaaaaccaatcaaacaccatctttct--tctagcgtttggt-caaatatagtaaccatttcttttggtttcttttccag-----------
|| ||  | || || ||||| ||||| || ||||| ||||||||| |||| || ||  | |||||||| || ||||||||||| ||||| |||||| ||||| ||       | ||| | || |    || ||      ||   |||||     ||||| |||  ||  |||     ||  ||||||            
GGCCGGTCAGTCTACATAAATATTCAAAAATTTGTGCAGTTCCAGTTAACAGTCAACATTGTTGCTCTCATGATCAACTTTGTTTCTGCATGCATCTCAGgtgcgttc----atccattaaatctttttccttacaacttaagatttggcgtctatataataaagatgacttagaaatttctttccaagtaattttcag

upper sequence: AT2G41560.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv08s0007g08960.t01 (Vitis vinifera), 5'ss of exon 5
GGACGTGCTGTATATATAAACATTCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTGGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACAGgtacgacagaaaaaccaatcaaacaccatctttcttctagcgtt--tggtcaaa-tatagta-accatttcttttggtttcttttccag----------------------------------------------
|| ||||| ||||||||||||||||| |||||||| ||||||||| | || |||||||||||||| ||  |  | || ||||| ||||| |||||||||||| ||   |   |   |   |  |      |||| | ||| | |  |  |   | | | | | |  ||  |  |      |     ||                                               
GGCCGTGCAGTATATATAAACATTCAAAAGTTTGTGCAGTTCCAGTTGACCGTTAATGTGGTTGCGCTTGTAGTAAATTTTGTTTCTGCGTGCATCACAGgtgcgttggcccatggagctagtcttttcatttcatgtagtgctcttatttgtacttttgcataatatgccaatcaacaacagcagcaataatgataataataataatgataaggatctttgaaacaacattcag

upper sequence: AT2G41560.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: PP1S37_351V6.1 (Physcomitrella patens), 5'ss of exon 7
GGACGTGCTGTATATATAAACATTCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTGGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACAGgtacgacagaaaaacca-atcaaacaccatctttcttcta---gcgtttggtcaaatatagtaaccatttcttttggtttctt--ttccag-----------------------------------------------
|| ||| |||| |||| ||||||||| |||||||| ||||||||||| ||||||||  ||||||||||| |||| || ||    || |||||||| |||||||       |  |          |    | |||    ||   | |   |  ||  ||||  ||  |      | | ||      | ||||                                               
GGTCGTTCTGTGTATACAAACATTCAAAAGTTTGTACAGTTCCAGCTTACTGTTAACCTGGTTGCTCTGGTCATTAATTTCAGTTCCGCTTGCATTACAGgtaaattttcagtattgcgcttctcggtttttttgaattaaaggagacagaccatgtataccaatgaaccacctagtttaagagatcccagtgatttttcattgtgatcttacatacttgtacgacgttttgtcccag