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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCAAGCTTAAGTATATTGCCCTCTGAAGAGAAGAAACCTGTAGCTCCGGTCGAATCATGTCCTATTTTAAAGACACTTTACAAGATACTCATCACAAGgtagataatatgaagtctgaaaagtttatacttctccaaaaaatattgaactttgctcagtcagatttggtgtgacatgatgggaagttagatatctagttttcaagaatgtcttgggactttgtgagacatcaaatcacttgaaacttgcttcttctattatctaataaaattgttgttgttctattttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G41540.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164135261|gb|ES143350.1|ES143350
EST:     ACACTTTACAAGATACTCATCACAAG                         AGAACAATCAACTCAGGCCATCCTGCAAGCATTAAGGGA
genomic: ACACTTTACAAGATACTCATCACAAGgtagataata ... tattttgcagAGAACAATCAACTCAGGCCATTCTGCAAGCATTAAGGGA
EST: gi|86076340|gb|DR372097.1|DR372097
EST:     GTCGAATCATGTCCTATTTTAAAGACACTTTACAAGATACTCATCACAAG                         AGAACAATCAACTCAGGCCATTCTGCAAGCATTAAGGGATGAGACATTGAA
genomic: GTCGAATCATGTCCTATTTTAAAGACACTTTACAAGATACTCATCACAAGgtagataata ... tattttgcagAGAACAATCAACTCAGGCCATTCTGCAAGCATTAAGGGATGAGACATTGAA
EST: gi|86083325|gb|DR379084.1|DR379084
EST:     GTCGAATCATGTCCTATTTTAAAGACACTTTACAAGATACTCATCACAAG                         AGAACAATCAACTCAGGCCATTCTGCAAGCATTAAGGGATGAGACATTGAA
genomic: GTCGAATCATGTCCTATTTTAAAGACACTTTACAAGATACTCATCACAAGgtagataata ... tattttgcagAGAACAATCAACTCAGGCCATTCTGCAAGCATTAAGGGATGAGACATTGAA