Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGCGCATCTGACGCATTGGTTCCAATTGCCAATGCCTTATCAATTAGTTCATGCTCAGATAAATTGCTTCAAATGAAGGCCGAGGCCCTATTTATGgtgagtagcctttcgttttcacttctcaaaatttaaactttgctttcagtgggcatgatcttctatgtcaatcctgcag

Basic information

species Arabidopsis thaliana
transcript AT2G41520.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G41520.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA03G28930.1 (Glycine max), 5'ss of exon 8
TGATGGCGCATCTGACGCATTGGTTCCAATTGCCAATGCCTTATCAATTAGTTCATGCTCAGATAAATTGCTTCAAATGAAGGCCGAGGCCCTATTTATGgtgagt--------agcctttcgttt---tcacttctcaaaatttaaactttgctttcagt--gggcatgatcttctatgtcaatcctgcag-------------------------------------------
|||||  ||   |   || || |  | |  | | || || || ||||| |||| || |||||| |||||||||||||||||||| ||||| |||| | ||||   |        |    || | |    |||  | |    ||||  | | || |||   |  |  | || | | ||   | |||  || |                                            
TGATGCAGCTGTTACTGCTTTAGAACTAGCTTCTAAGGCATTGTCAATAAGTTTATACTCAGAAAAATTGCTTCAAATGAAGGCAGAGGCTCTATGTTTGgtattttctactctaattatttgctccactcatctttatgcatttttattctgttttttttttgttcttgttttgcttaattaatt-tgtattaggggaataaaaggtgctgtttattattgtaatgtcttgcag