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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACAGAGAGCTGGTAGAAATGGCAGAGCACCGGAAGGAATTGGACAAGATGACAAAACCAGTCCTTGATACTCTACGAAGCTACCAGGATTTACCTCCGgtaatcttcatctctggttctccaagcccttattgatctgcattgtcaatctcctctttgttattggtcattgctagtcctggttcacagtagattggttgttcatttctgtaaacag

Basic information

species Arabidopsis thaliana
transcript AT2G41350.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G41350.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv13s0073g00670.t01 (Vitis vinifera), 5'ss of exon 5
CCACAGAGAGCTGGTAGAAATGGCAGAGCACCGGAAGGAATTGGACAAGATGACAAAACCAGTCCTTGATACTCTACGAAGCTACCAGGATTTACCTCCGgtaatcttcatctctggttctccaagcccttattgatctgcattgtcaatctcctctttgttattggtcattgctagtcctggttcacagtagattggttgttcatttctgtaaacag
|||  | | | |||| |||||||| |||||| ||||||| ||||| ||||  ||||| ||  ||||||||||| |  ||||||||||||| || ||||| ||||||        |||||        |   |   | || || | | |  |  |||||   ||||  | |  |  |        ||| | || |||  ||| |  |||||| |     
CCATGGGGTGTTGGTTGAAATGGCTGAGCACAGGAAGGATTTGGAGAAGAAAACAAAGCCCATCCTTGATACTTTGAGAAGCTACCAGGACTTGCCTCCTgtaatcaat-----tggttactatgatcaaca--aagcttcacttttacacatctcttgcatattttttacaggaaaat---agtcagattaaattc-ttgctt-tttctgcag----

upper sequence: AT2G41350.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv05s0049g01470.t01 (Vitis vinifera), 5'ss of exon 5
CCACAGAGAGCTGGTAGAAATGGCAGAGCACCGGAAGGAATTGGACAAGATGACAAAACCAGTCCTTGATACTCTACGAAGCTACCAGGATTTACCTCCGgtaatcttcatctctggttctccaagcccttattgatctgcattgtcaatctcctctttgttattggtcattgctagtcctggttcacagtagattggttgttcatttctgtaaacag
|||  | | | |||| |||||||| |||||| ||||||| ||||| ||||  || || ||  ||||||||||| |  ||||||||||||| || ||||| |||| |   ||   ||| | |          |   | || || | | |  |  |||||   ||||  | |  |  |        ||| | || |||  ||| |  |||||| |     
CCATGGGGTGTTGGTTGAAATGGCCGAGCACAGGAAGGACTTGGAGAAGAAAACGAAGCCCATCCTTGATACTTTGAGAAGCTACCAGGACTTGCCTCCTgtaagca--attcatggctatga-----tcaacaaagcttcacttttacacatctcttgcatattttttacaggaaaat---agtcagattaaattc-ttgctt-tttctgcag----