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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGCATTTGGGATTACTACGGCCACCAAAAGTATTCTTTGATGAATGACTTAGATAAGACACTGGACGATGCTAACCTACAAATGGATCAGGATgtgagttcacttcttcttcttcttctttttgctttcaaagttattagctatttgaatataaattttttatgcttcagtccgattgtttagttagcctaagcttaaggttttatagctctctgacttttatcttttctggtgttcttactgactcgttaactttcccactgattttgtgtctgtcgtttaaaaacag

Basic information

species Arabidopsis thaliana
transcript AT2G40930.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G40930.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA19G30650.1 (Glycine max), 5'ss of exon 5
GTACGCATTTGGGATTACTACGGCCACCAAAAGTATTCTTTGATGAATGACTTAGATAAGACACTGGACGATGCTAACCTACAAATGGATCAGGATgtgagttcacttcttcttcttcttctttttgctttcaaagttattagctatttgaatataaattttttatgcttcagtccgattgtttagttagcctaagcttaaggttttatagctctctgacttttatcttttctggtgttcttactgactcgttaactttcccactgattttgtgtctgtcgtttaaaaacag
||  | |||||||||||||| | ||  | |||| || |||||||||||||| | || || || || |||||||||||  |||||||||| || |||||||||  | |   | |  ||  | |       |||     | ||   | |    | | |   |||  ||   ||| ||   || ||   ||     | | | |   |  || ||                                                                                 
GTGTGTATTTGGGATTACTATGCCCGTCGAAAGCATGCTTTGATGAATGACATGGACAAAACTCTCGACGATGCTAATTTACAAATGGACCAAGATgtgagt--attcagtatgttttatgtaggaatgttc----ctcttgcttgtgcttacaca---tttcaatttatcactcttgtttttcttttgattaatgataatattcatacag---------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164039610|gb|ES184194.1|ES184194
EST:     ATGACTTAGATAAGACACTGGACGATGCTAACCTACAAATGGATCAGGAT                         ATTTTGGNGGAGGTG
genomic: ATGACTTAGATAAGACACTGGACGATGCTAACCTACAAATGGATCAGGATgtgagttcac ... ttaaaaacagATTTTGGTGGAGGTG