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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATAGTCTGAGAGTTGCAAAGGAAAACAATATCAAATACATTGCATTTCCTGCCATATCTTGTGGGATTTACGGgtaaagttgtcacaaccagagacctaagttgttcatattgttttcctatttagtttttttgctcttagagtgagtatgatttgctactagaccaatccatctaattttttacctttagtgattgacaactcttggaaagtttgtgcaaggtgaaagtgaaaccttatgttcgaaatcaattgtttttgttag

Basic information

species Arabidopsis thaliana
transcript AT2G40600.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G40600.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: EFJ23032 (Selaginella moellendorffii), 5'ss of exon 4
-AAATAGTCTGAGAGTTGCAAAGGAAAACAATATCAAATACATTGCATTTCCTGCCATATCTTGTGGGATTTACGGgtaaagttgtcacaaccagagacctaagttgttcatattgttttcctatttagtttttttgctcttagagtgagtatgatttgctactagaccaatccatctaattttttacctttagtgattgacaactcttggaaagtttgtgcaaggtgaaagtgaaaccttatgttcgaaatcaattgtttttgttag
 || |     |||  |||| |  || ||     |||||| |||||||||||| ||||| || ||||| |||||||||||||        | |   | |    ||||  ||   ||  ||  || | || | ||| |  |  || ||    |||| |    |  |    ||                                                                                                  
CAACTCACTCGAGC-TTGCGAGAGAGAAAGGCGTCAAATGCATTGCATTTCCAGCCATCTCGTGTGGAATTTACGGgtaaa--------agctgaacatt--agtttctcgcttttcttcgctttataatctttct-ttgctaaagc---tatgctccttttttttggcag-------------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116425484|gb|EG468076.1|EG468076
EST:     AACAATATCAAATACATTGCATTTCCTGCCATATCTTGTGGGATTTACGG                         ATATCCTTTTGATGAAGCTGCTGCGATAGGTATTTCAACCATCAAACAATT
genomic: AACAATATCAAATACATTGCATTTCCTGCCATATCTTGTGGGATTTACGGgtaaagttgt ... tttttgttagATATCCTTTTGATGAAGCTGCTGCGATAGGTATTTCAACCATCAAACAATT
EST: gi|164221891|gb|ES063061.1|ES063061
EST:     GTGGGATTTACGG                         ATATCCTTTTGATGAAGCTGCTGCGATAGGTATTTCAACCATCAAACAATT
genomic: GTGGGATTTACGGgtaaagttgt ... tttttgttagATATCCTTTTGATGAAGCTGCTGCGATAGGTATTTCAACCATCAAACAATT
EST: gi|125078783|gb|EL141036.1|EL141036
EST:     AACAATATCAAATACATTGCATTTCCTGCCATATCTTGTGGGATTTACGG                         ATATCCTTTTGATGAAGCTGCTGCGAT
genomic: AACAATATCAAATACATTGCATTTCCTGCCATATCTTGTGGGATTTACGGgtaaagttgt ... tttttgttagATATCCTTTTGATGAAGCTGCTGCGAT
EST: gi|164154530|gb|ES045671.1|ES045671
EST:     AACAATATCAAATACATTGCATTTCCTGCCATATCTTGTGGGATTTACGG                         ATATCCTTTTGA
genomic: AACAATATCAAATACATTGCATTTCCTGCCATATCTTGTGGGATTTACGGgtaaagttgt ... tttttgttagATATCCTTTTGA